Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1474
         (784 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025941-1|ABG02185.1|  207|Drosophila melanogaster IP14143p pro...    29   5.4  
BT025938-1|ABG02182.1|  207|Drosophila melanogaster IP14043p pro...    29   5.4  
AE014134-759|AAF50995.3| 1118|Drosophila melanogaster CG15635-PA...    29   5.4  
BT022386-1|AAY54802.1|  220|Drosophila melanogaster IP05284p pro...    29   7.2  

>BT025941-1|ABG02185.1|  207|Drosophila melanogaster IP14143p
           protein.
          Length = 207

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -2

Query: 762 PGMQMLHEPHSRHSPKGGLWSRDTGRVAPLLDTSPPVDNREQETR*GGSQAPPLTAL 592
           PG  +L      H P G     ++G V P    SPP     Q+    GSQ PP + L
Sbjct: 123 PGSHLLSNSGKPHPP-GSQMPPNSGFVLPPAICSPPYGPPNQDGNPPGSQTPPNSEL 178


>BT025938-1|ABG02182.1|  207|Drosophila melanogaster IP14043p
           protein.
          Length = 207

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -2

Query: 762 PGMQMLHEPHSRHSPKGGLWSRDTGRVAPLLDTSPPVDNREQETR*GGSQAPPLTAL 592
           PG  +L      H P G     ++G V P    SPP     Q+    GSQ PP + L
Sbjct: 123 PGSHLLSNSGKPHPP-GSQMPPNSGFVLPPAICSPPYGPPNQDGNPPGSQTPPNSEL 178


>AE014134-759|AAF50995.3| 1118|Drosophila melanogaster CG15635-PA
           protein.
          Length = 1118

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -2

Query: 762 PGMQMLHEPHSRHSPKGGLWSRDTGRVAPLLDTSPPVDNREQETR*GGSQAPPLTAL 592
           PG  +L      H P G     ++G V P    SPP     Q+    GSQ PP + L
Sbjct: 105 PGSHLLSNSGKPHPP-GSQMPPNSGFVLPPAICSPPYGPPNQDGNPPGSQTPPNSEL 160


>BT022386-1|AAY54802.1|  220|Drosophila melanogaster IP05284p
           protein.
          Length = 220

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -1

Query: 352 PGCVCRCVSLLY---GSQVLSGSPSQSTSLP---AASTQKVLRDLEGDSKVTSAP 206
           P CV  C S LY   GS     SP+   + P   A+S  ++ +  E  S+VT +P
Sbjct: 98  PQCVPACYSCLYWFRGSMTSPASPTDGETSPVTEASSIGELTQTTEAGSEVTESP 152


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,318,370
Number of Sequences: 53049
Number of extensions: 850871
Number of successful extensions: 1930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)