Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1474
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U40948-3|AAA81729.1|  307|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -1

Query: 379  PATRVAGSEPGCVCRCVSLLYGSQVLSGSPSQSTSLPAASTQKVLRDLEGDSKVTSAP 206
            P+T  A S  G     VS +  + +   S S  +++P+ STQ      EG SK +S+P
Sbjct: 1357 PSTTFASSTSGSTISDVSSVSTTSLAPLSSSLPSTVPS-STQSFSSTSEGSSKASSSP 1413


>U40948-3|AAA81729.1|  307|Caenorhabditis elegans Hypothetical
           protein F55D10.4 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 362 WIRARLCMQVCFFVIR*SSTFWIAKPEHLASGSV 261
           W+   L +   FF+IR S +F +A P HLA  SV
Sbjct: 141 WLLVTLLLLSDFFLIRLSRSFVLAVPFHLALLSV 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,438,703
Number of Sequences: 27780
Number of extensions: 426828
Number of successful extensions: 863
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)