Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1474
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.8  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 584 HANKNYRFNDYNCLHRIN*WYGIFVNMCR*VY 489
           H N NY++N  N  +  N +   + N C+ +Y
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLY 355


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 424 ITSGSQNDERLLDCFPATRVAGSEPGCVCRCVS 326
           +T   +N  + L+  P   +    PG V +CVS
Sbjct: 141 LTQEPKNTNKFLEKGPVALINELYPGVVYKCVS 173


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +1

Query: 223 YYHLQDPAVLFEWTLPEARCSGLAI 297
           Y H++DP     W       +G+A+
Sbjct: 124 YIHIKDPLRYGRWVTRRIAVAGIAV 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,918
Number of Sequences: 438
Number of extensions: 5651
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)