Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1473
         (732 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8II59 Cluster: Putative uncharacterized protein; n=1; ...    33   5.5  
UniRef50_Q7RQV8 Cluster: Putative uncharacterized protein PY0098...    33   9.5  

>UniRef50_Q8II59 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 985

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = -3

Query: 433 IINAVLFYCLANIYIISYMLFSILDVSRVYVSK-SANPYKRYDPLILKTVIEAYEIRN-K 260
           I+N  L Y L + Y+I++    I+    VY++     P++ Y+ LI+       E +N +
Sbjct: 310 ILNQSLNYILNSCYLINFFNVFIIHFQEVYINYIEYEPFETYEDLIVYIKENILEDKNVQ 369

Query: 259 SLLKYLSNLP*VSRFCTDM*QER*NLKVDKN 167
            ++K ++ +     FCT    ER  L++ KN
Sbjct: 370 EIIKRINEIDEGVLFCTQGILER-ILEIIKN 399


>UniRef50_Q7RQV8 Cluster: Putative uncharacterized protein PY00982;
           n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY00982 - Plasmodium yoelii yoelii
          Length = 277

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 343 VSKSANPYKRYDPLILKTVIEAYEIRNKSLLKYLSN 236
           ++KSANP K   P+I K  IE  EI+N   L+Y  N
Sbjct: 2   ITKSANPEKIVTPIINKQSIEPIEIKNLHELEYELN 37


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,839,976
Number of Sequences: 1657284
Number of extensions: 13342075
Number of successful extensions: 26436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26428
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)