Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1473
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   6.4  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    26   6.4  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = -1

Query: 483 VRIWFIHDVFV*NFYSKLSMQCYFIVWQIFILS 385
           ++++F+ + FV  +YS +S+  +F++ QIF L+
Sbjct: 564 LQVFFMGNPFV--WYSVISLVAFFVIVQIFCLA 594


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 415 FYCLANIYIISYMLFSILDVSRVYVSKSANPYKRYDPLILKTVIEA 278
           FY   N+Y+    LF  L V+R Y++  A    +     L+T +EA
Sbjct: 98  FYAQRNLYLCGSALFLSLVVNRYYLALEAMIAAQDKMQALQTQVEA 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,847
Number of Sequences: 5004
Number of extensions: 62081
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)