Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1473
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116...    28   6.6  
11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,473...    28   8.8  

>05_06_0106 -
           25611239-25611295,25611388-25611477,25611582-25611669,
           25611757-25611836,25611968-25612120,25612403-25612546,
           25612633-25612884,25612985-25613116,25613207-25613287,
           25613368-25613488,25613930-25614025,25614195-25614298,
           25614481-25614567,25614690-25614803,25614871-25614930,
           25615007-25615102,25615316-25615366,25615457-25615562,
           25615642-25615713,25616117-25616172,25616446-25616508,
           25616636-25616764
          Length = 743

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 6   LVSGLYFFVLSKYLGADI--FIWVKRLGLSVIP*INQVD 116
           L  G+YF  L  Y   DI  F+W+ R+G  V P I + D
Sbjct: 599 LTLGVYFTGLVGYPSDDINKFLWMVRIGGGVFPHIKEPD 637


>11_01_0595 +
           4732330-4732723,4732839-4732903,4733023-4733143,
           4733596-4733687,4733850-4733915,4734106-4734125,
           4734147-4734239,4734358-4734445,4734570-4734635,
           4734728-4734843,4735410-4735500,4736133-4736234,
           4736342-4736425,4736551-4736643,4736728-4736823,
           4736914-4736999,4737528-4737606,4737675-4737788,
           4737890-4737985,4738060-4738123,4738221-4738510,
           4738901-4738956,4739060-4739177,4739287-4739367,
           4739683-4739762,4740001-4740055,4740142-4740211,
           4740279-4740468,4740567-4740690,4741055-4741129,
           4741217-4741390
          Length = 1112

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -3

Query: 484 GKNLVYS*CFCLELLFKIINAVLFYCLANIYIISYMLFSILDVS 353
           GK L+ +      L FK++  +L YC+  I  IS ++ ++ +++
Sbjct: 397 GKALIINEIIMWNLSFKVVMPILQYCIVPINGISIIILTLFELT 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,849,743
Number of Sequences: 37544
Number of extensions: 317619
Number of successful extensions: 463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)