Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1473
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18371| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_40223| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_1686| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-12)                  28   9.0  

>SB_18371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -1

Query: 207 TCNKNDETSRWTK 169
           TCN NDE SRWTK
Sbjct: 127 TCNDNDEVSRWTK 139


>SB_40223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 451 LELLFKIINAVLFYCLANIYIISYMLFSILDVSRVYVSK 335
           L    K+ NA++   +A  + ++Y LFS+L +  +Y+ K
Sbjct: 375 LSTKLKVYNAIVLPGIAISFYVNYYLFSVLLLVYIYIRK 413


>SB_1686| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-12)
          Length = 362

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 520 CLCSITIFFKFVGKNLVYS*CFCLEL-LFKIINAVLFYCL 404
           C+ +I I  +F+GK+ + +  FCL + +  +++ VLF C+
Sbjct: 161 CVAAI-ISLRFIGKSYLRNIIFCLHIDIAIVVSVVLFACV 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,760,226
Number of Sequences: 59808
Number of extensions: 401435
Number of successful extensions: 746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)