Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1473
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68297-4|CAB54220.1|  356|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical p...    29   3.4  
U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41007-1|AAA82264.1|  326|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z68297-4|CAB54220.1|  356|Caenorhabditis elegans Hypothetical
           protein F11A10.6 protein.
          Length = 356

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = +3

Query: 474 RFLPTNLKNIVILHRQPYKPVPIYT*FVSILLILTPFSLLFVPETSPISPKTTDFYMYFY 653
           +FLP  +     L R  Y  +P    FVS +L LT F+         I  + +  Y+ FY
Sbjct: 155 QFLPDTIVLATPLGRIKYAHLPFLAIFVSFILALTKFTYFVSFLQITIGVQVSWTYLRFY 214

Query: 654 FIKNIKTTEIY 686
             K  +T EIY
Sbjct: 215 --KPHETDEIY 223


>Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 426 MQCYFIVWQIFILSVTCCFLF*MCLACTYQRVQILIRDMIP 304
           +QC  ++W    L +   F+  +C+A TYQ   + +++  P
Sbjct: 107 LQCLSLIWYCPELLIVSRFITSICMAATYQSCILFLQECSP 147


>Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 426 MQCYFIVWQIFILSVTCCFLF*MCLACTYQRVQILIRDMIP 304
           +QC  ++W    L +   F+  +C+A TYQ   + +++  P
Sbjct: 107 LQCLSLIWYCPELLIVSRFITSICMAATYQSCILFLQECSP 147


>U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical
           protein F47G3.1 protein.
          Length = 886

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 175 PP*GFIVLVTCLCKTDLLMVNCLGIST 255
           PP  FI+L+ C+  +  L+V C  IST
Sbjct: 7   PPTRFIILIACILASIQLLVQCSPIST 33


>U41007-1|AAA82264.1|  326|Caenorhabditis elegans Hypothetical
           protein C33H5.7 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 579 PFSLLFVPETSPISPKTTDFYMYFYFIKNIKTTEIYL 689
           P    F PE+S I   ++D Y+YFY   +++T EI L
Sbjct: 248 PLMASFTPESSHIMVGSSDGYIYFY---DVETGEIAL 281


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical protein
            T20G5.5 protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -3

Query: 352  RVYVSKSANPYKRYDPLILKTVIEAYEIRNKSLLKYLSN 236
            R+ VSK ++PY  + PLILK ++  ++  NKS    L N
Sbjct: 1129 RLLVSKMSSPYIPFVPLILKDLMFIHQ-GNKSFYNGLVN 1166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,708
Number of Sequences: 27780
Number of extensions: 338363
Number of successful extensions: 923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)