Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1473
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18770.1 68418.m02230 F-box family protein contains F-box dom...    29   2.4  
At1g23830.1 68414.m03006 expressed protein                             29   4.2  
At1g53080.1 68414.m06010 legume lectin family protein                  28   5.6  

>At5g18770.1 68418.m02230 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 481

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 531 PVPIYT*FVSILLILTPFSLLFVPETSPISPKTTDFYMYFYFIKNIKT 674
           P  + T F  +L     FSL  V   SPI+ K T+  +  YF++N  T
Sbjct: 375 PEAVITGFSRVLPRCLVFSLESVEMESPITEKATELKLVRYFLENSAT 422


>At1g23830.1 68414.m03006 expressed protein
          Length = 345

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -3

Query: 451 LELLFKIINAVLFYCLANIYIISYMLFSILDV-SRVYVS 338
           L+LLF  IN +LF CL ++ +  +++F  L + + VY++
Sbjct: 19  LKLLFGNINLLLFLCLCSLPLFFFLIFFELSLQTTVYLT 57


>At1g53080.1 68414.m06010 legume lectin family protein
          Length = 283

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 6/29 (20%)
 Frame = +1

Query: 643 CIFIL------SKTLKQLRFTFNIYDGSN 711
           CIF+L      SKT+  ++F FN +DG+N
Sbjct: 7   CIFVLFISLLSSKTISAVKFNFNRFDGTN 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,512
Number of Sequences: 28952
Number of extensions: 292318
Number of successful extensions: 526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)