Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1472
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   3.9  
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    26   6.9  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.1  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 480  IYIVINIHTILSRVKWILVYILPDLLLSPSSRACSMLTFGTSYI*LSIPSF 632
            +YIV +I+T+ S   W L  +LP    S +S +   L +  S++ + I SF
Sbjct: 1964 LYIVGSIYTVSSVFWWYLYRMLP----SVASLSLPFLLYCASFLLIGISSF 2010


>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 250 DDYMNVTIFIVYKTMKNSKLNHKRRFIL 167
           D+Y  V+   +YK MK   ++HK + I+
Sbjct: 244 DNYPGVSDVEIYKKMKEENIHHKSKAIV 271


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 393  ILLIKNIFEKLCYLRSQCLNM 455
            I LIKN+FE+L +L  + LN+
Sbjct: 1493 IELIKNLFERLHFLLPKALNL 1513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,715
Number of Sequences: 5004
Number of extensions: 66141
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)