Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1472
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277...    28   7.2  
04_01_0238 - 3095098-3095466,3097496-3097526,3098082-3098527           28   7.2  
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152...    28   7.2  
10_01_0099 - 1202668-1203023,1203097-1206037                           28   9.5  

>05_01_0355 -
           2774217-2774318,2774608-2774775,2774872-2775090,
           2775176-2775319,2775485-2775767,2775874-2775929,
           2776012-2776161,2776254-2776340,2776414-2776449,
           2777100-2777162,2777247-2777327,2777407-2777496,
           2777690-2777767,2777855-2778058,2778139-2778186,
           2778262-2778447,2779879-2779978,2780121-2780260
          Length = 744

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 220 VYKTMKNSKLNHKR-RFILS-ETCEI*GKFVPLTLNFVISTYQGTITI 83
           V+K    ++  H++  +I S  TC I  KF   T+  +++TYQ  + +
Sbjct: 540 VFKEFYQTRTKHRKLTWIYSLGTCNINAKFEAKTIELIVTTYQAALLL 587


>04_01_0238 - 3095098-3095466,3097496-3097526,3098082-3098527
          Length = 281

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 286 YVSNTSQFFVVTDDYMNVTIFIVYKTMKNSKLN 188
           Y  N ++F        N  +F+VY+ MKN KLN
Sbjct: 100 YSWNIARFMCSCFSKKNKELFLVYELMKNGKLN 132


>01_04_0017 -
           15113479-15113580,15113950-15114117,15115011-15115229,
           15115303-15115446,15115558-15115840,15115936-15115991,
           15116067-15116216,15116299-15116385,15116463-15116498,
           15116746-15116808,15116887-15116967,15117053-15117142,
           15117349-15117426,15117510-15117731,15117788-15117835,
           15117948-15118133,15120910-15121009,15121107-15121246
          Length = 750

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 220 VYKTMKNSKLNHKR-RFILS-ETCEI*GKFVPLTLNFVISTYQGTITI 83
           V+K    ++  H++  +I S  TC I  KF   T+  +++TYQ  + +
Sbjct: 546 VFKEFYQTRTKHRKLTWIYSLGTCNINAKFEAKTIELIVTTYQAALLL 593


>10_01_0099 - 1202668-1203023,1203097-1206037
          Length = 1098

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 384 QRRILLIKNIFEKLCYLRSQC 446
           Q+R +LIK++ + LCYL   C
Sbjct: 908 QKRNILIKDVAQALCYLHHDC 928


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,135,615
Number of Sequences: 37544
Number of extensions: 346185
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)