Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1472
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-17|AAK68214.1|  657|Caenorhabditis elegans Uncoordinated ...    29   4.8  
U88308-16|AAK68212.1|  586|Caenorhabditis elegans Uncoordinated ...    29   4.8  
U88308-15|AAK68218.1|  548|Caenorhabditis elegans Uncoordinated ...    29   4.8  
U88308-14|AAK68213.1|  546|Caenorhabditis elegans Uncoordinated ...    29   4.8  
U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated ...    29   4.8  
U88308-12|AAK68216.1|  467|Caenorhabditis elegans Uncoordinated ...    29   4.8  
AF144261-1|AAD37369.1|  456|Caenorhabditis elegans AP180-like ad...    29   4.8  
AF144260-1|AAD37368.1|  535|Caenorhabditis elegans AP180-like ad...    29   4.8  
AF144259-1|AAD37367.1|  546|Caenorhabditis elegans AP180-like ad...    29   4.8  
AF144258-1|AAD37366.1|  548|Caenorhabditis elegans AP180-like ad...    29   4.8  
AF144257-1|AAD37365.1|  586|Caenorhabditis elegans AP180-like ad...    29   4.8  

>U88308-17|AAK68214.1|  657|Caenorhabditis elegans Uncoordinated
           protein 11, isoform c protein.
          Length = 657

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 703 VNKRVFNTSFFSLHRWVNMVHLVLNDGILNYI*DVPKVNIEQARD 569
           +N  V N SF  L R +  +    NDGI+N +     +N +Q RD
Sbjct: 205 LNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRD 249


>U88308-16|AAK68212.1|  586|Caenorhabditis elegans Uncoordinated
           protein 11, isoform a protein.
          Length = 586

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 703 VNKRVFNTSFFSLHRWVNMVHLVLNDGILNYI*DVPKVNIEQARD 569
           +N  V N SF  L R +  +    NDGI+N +     +N +Q RD
Sbjct: 205 LNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRD 249


>U88308-15|AAK68218.1|  548|Caenorhabditis elegans Uncoordinated
           protein 11, isoform h protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 703 VNKRVFNTSFFSLHRWVNMVHLVLNDGILNYI*DVPKVNIEQARD 569
           +N  V N SF  L R +  +    NDGI+N +     +N +Q RD
Sbjct: 205 LNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRD 249


>U88308-14|AAK68213.1|  546|Caenorhabditis elegans Uncoordinated
           protein 11, isoform b protein.
          Length = 546

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 703 VNKRVFNTSFFSLHRWVNMVHLVLNDGILNYI*DVPKVNIEQARD 569
           +N  V N SF  L R +  +    NDGI+N +     +N +Q RD
Sbjct: 205 LNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRD 249


>U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated
           protein 11, isoform d protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 703 VNKRVFNTSFFSLHRWVNMVHLVLNDGILNYI*DVPKVNIEQARD 569
           +N  V N SF  L R +  +    NDGI+N +     +N +Q RD
Sbjct: 205 LNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRD 249


>U88308-12|AAK68216.1|  467|Caenorhabditis elegans Uncoordinated
           protein 11, isoform e protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 703 VNKRVFNTSFFSLHRWVNMVHLVLNDGILNYI*DVPKVNIEQARD 569
           +N  V N SF  L R +  +    NDGI+N +     +N +Q RD
Sbjct: 205 LNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRD 249


>AF144261-1|AAD37369.1|  456|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 703 VNKRVFNTSFFSLHRWVNMVHLVLNDGILNYI*DVPKVNIEQARD 569
           +N  V N SF  L R +  +    NDGI+N +     +N +Q RD
Sbjct: 205 LNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRD 249


>AF144260-1|AAD37368.1|  535|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 703 VNKRVFNTSFFSLHRWVNMVHLVLNDGILNYI*DVPKVNIEQARD 569
           +N  V N SF  L R +  +    NDGI+N +     +N +Q RD
Sbjct: 205 LNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRD 249


>AF144259-1|AAD37367.1|  546|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 546

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 703 VNKRVFNTSFFSLHRWVNMVHLVLNDGILNYI*DVPKVNIEQARD 569
           +N  V N SF  L R +  +    NDGI+N +     +N +Q RD
Sbjct: 205 LNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRD 249


>AF144258-1|AAD37366.1|  548|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 703 VNKRVFNTSFFSLHRWVNMVHLVLNDGILNYI*DVPKVNIEQARD 569
           +N  V N SF  L R +  +    NDGI+N +     +N +Q RD
Sbjct: 205 LNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRD 249


>AF144257-1|AAD37365.1|  586|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 586

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 703 VNKRVFNTSFFSLHRWVNMVHLVLNDGILNYI*DVPKVNIEQARD 569
           +N  V N SF  L R +  +    NDGI+N +     +N +Q RD
Sbjct: 205 LNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRD 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,144,141
Number of Sequences: 27780
Number of extensions: 359515
Number of successful extensions: 710
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)