Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1472
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02570.1 68417.m00351 cullin family protein similar to cullin...    32   0.36 
At1g02980.1 68414.m00268 cullin family protein similar to cullin...    31   0.84 
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea...    28   5.9  

>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
           [Homo sapiens] GI:3639052; contains Pfam profile
           PF00888: Cullin family
          Length = 738

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 220 VYKTMKNSKLNHKR-RFILS-ETCEI*GKFVPLTLNFVISTYQGTITI*NFNTLIK 59
           V+K    +K  H++  +I S  TC I GKF    +  ++STYQ  + +  FNT  K
Sbjct: 534 VFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLL-LFNTTDK 588


>At1g02980.1 68414.m00268 cullin family protein similar to cullin 1
           [Homo sapiens] GI:3139077; contains Pfam profile
           PF00888: Cullin family
          Length = 742

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 217 YKTMKNSKLNHKR-RFILS-ETCEI*GKFVPLTLNFVISTYQGTITI*NFNT 68
           +K    +K N +R  +I S  TC++ GKF   T+  V++TYQ  + +   NT
Sbjct: 539 FKAYYGTKTNSRRLSWIYSLGTCQLAGKFDKKTIEIVVTTYQAAVLLLFNNT 590


>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 9
           (SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
           domain, G-beta repeat (4 copies)
          Length = 1677

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 628 HLTPGGPCSPTYAMKKKMY*KHVCL-RAYLKVYKRS 732
           HL   GPC  TYA+ +    +H  L R Y   Y RS
Sbjct: 58  HLLSSGPCQKTYALLRHELLEHELLPRRYHAWYSRS 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,618,620
Number of Sequences: 28952
Number of extensions: 312153
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)