Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1471
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.81 
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    29   1.1  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   10.0 
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    25   10.0 
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   10.0 

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 607 INIINDIEIPVLCDIINFEGYL 672
           +NI+ +I IPVL D + FE Y+
Sbjct: 199 VNIVLEIHIPVLRDFVTFEQYI 220


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -2

Query: 254 FLYQFQSINKLKSLSLNKTIA*KGKRKYFLKNNFLSNTRLNQRHFRKFDRYSLGCTIFDL 75
           +L   +SIN+  SLS+ K+ +   ++   L N  +  +R++   F K D  S      D+
Sbjct: 284 YLRDRRSINRQSSLSIPKSTSETTRKTLALSNGGIDQSRVSSDSF-KVDDSSAKMAAIDI 342

Query: 74  W 72
           W
Sbjct: 343 W 343


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 414 IFANFSGAKEIENDVGKACKSRFGWSKKIFPNILYNLL 527
           +F N+S  K+  N   K   S++   KK+  N +YN+L
Sbjct: 117 MFTNYSNPKD--NGFSKLLFSQYSDEKKVLVNFVYNVL 152


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/71 (21%), Positives = 32/71 (45%)
 Frame = -2

Query: 344 IFFAIPAYNIYHFLILKDKQGRMA*SARLIFLYQFQSINKLKSLSLNKTIA*KGKRKYFL 165
           IF++     ++        +  +A +  ++ +  FQS+ KLK L+ + ++    K     
Sbjct: 418 IFYSFFVKTLHAISSSSAAESSIALALHMLVINAFQSMEKLKILTFDDSLQEIYKEAQIQ 477

Query: 164 KNNFLSNTRLN 132
              F+SN  L+
Sbjct: 478 SGTFMSNATLS 488


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 453 DVGKACKSRFGWSKKIFPNILYNLLITAIIVKYLNFAH 566
           +  K   +R  WS KI   +L   +I   + KYL FA+
Sbjct: 56  EASKVADTRTAWSTKIPAVLLPVFVINIALFKYLVFAN 93


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 142 VFERKLFFKKYFRLPFYAIVLFRLNDFSLFIDWN*YKNIRRA 267
           +F+  LF  K FR+  Y + +F L  F   I W   K + RA
Sbjct: 67  LFQHPLF-SKLFRISLYILGVFSLYMFRWAIAWFCEKRLSRA 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,805
Number of Sequences: 5004
Number of extensions: 63278
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)