Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1471
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   2.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   8.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 460 PTSFSISFAPEKLANMRQDNLHSHIP*ARHINTYIH*TLFSSQYPR 323
           P  F  S   E+  N++     S +    +I TYI  T +SS+Y R
Sbjct: 167 PNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYMR 212


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 459 LHRSLSLSHPKNWQICDK 406
           L  ++++  P NW+ICD+
Sbjct: 16  LMMAIAVELPNNWRICDR 33


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 224 LKSLSLNKTIA*KGKRKYFLKNNFLSNTRLNQRH 123
           + SLS NKTI      KY   NN  +N   N  +
Sbjct: 315 ISSLS-NKTIHNNNNYKYNYNNNNYNNNNYNNNY 347


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 814 TGIARTRTWDLLSSTS 767
           TG+ R+R+W  L +T+
Sbjct: 354 TGLERSRSWSSLDNTN 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,373
Number of Sequences: 438
Number of extensions: 4501
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)