Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1468
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016429-1|AAB65365.2|  518|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>AF016429-1|AAB65365.2|  518|Caenorhabditis elegans Hypothetical
           protein T21H3.4 protein.
          Length = 518

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +1

Query: 211 IK*KF*GLHKLIMMLAVYECV*KNVFPNIGLFENVRFEFYHKIIKMNVLLLNVFTMYSVE 390
           +K K   ++++   LA++  V KN  PN G F  V++     +  M   +LN    Y   
Sbjct: 213 VKKKATKINQMKKSLALHAMV-KNELPNSGNFFFVKYPHRDSLCYMRFSILNYSKEYGSR 271

Query: 391 KNTYNFDLNLSRN 429
            N  N D+++  N
Sbjct: 272 SNKTNTDISMHHN 284


>Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical
           protein F56H9.1 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 724 AYFCLLTSLVINILILTTIYFLHKSNKEILY 632
           +++ L TS  ++  IL T+YFL+    E+LY
Sbjct: 40  SFYILCTSKTLSNFILLTVYFLYIGPTELLY 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,299,653
Number of Sequences: 27780
Number of extensions: 279142
Number of successful extensions: 618
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)