Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1468
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.9  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 567 LNCADSVSQVRCAHCVFS--YVHIYKISL 647
           L    +V Q RCA+C ++  Y H  K+ L
Sbjct: 36  LKSHSNVYQYRCANCTYATKYCHSLKLHL 64


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 427 FDS-NLDQSCTYFSQPNTL*THLKAIHSF 344
           F+S N+D+  TYF + +TL  +  A+ +F
Sbjct: 453 FESVNIDKLYTYFDKCDTLINNAVAVENF 481


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 427 FDS-NLDQSCTYFSQPNTL*THLKAIHSF 344
           F+S N+D+  TYF + +TL  +  A+ +F
Sbjct: 453 FESVNIDKLYTYFDKCDTLINNAVAVENF 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,831
Number of Sequences: 438
Number of extensions: 2994
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)