Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1466
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 46 7e-06
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 33 0.042
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 31 0.23
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 29 0.52
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 27 2.1
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 27 2.8
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 4.8
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 4.8
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 6.4
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 26 6.4
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 6.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 6.4
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 8.5
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 8.5
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 45.6 bits (103), Expect = 7e-06
Identities = 27/77 (35%), Positives = 37/77 (48%)
Frame = +2
Query: 269 VPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGF 448
+P TRY + T ++ L+SP +L + Q Q +R T Y GTGF
Sbjct: 16 IPPVTRYILLGTAATTILTLCQLLSPSMLVLHYPLVVRQKQWYRLFTNYLY----AGTGF 71
Query: 449 HFLINCYFLYNYSQRLE 499
F++N YF Y YS LE
Sbjct: 72 DFIMNIYFFYQYSTYLE 88
Score = 31.9 bits (69), Expect = 0.098
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 598 LMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKAMYLPWVLLAF 723
L + ++ Y W N + F FG + YLP+VLL F
Sbjct: 123 LNQSLAAAIAYNWSLFNSFSKIQFLFGFHVQGKYLPYVLLGF 164
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 33.1 bits (72), Expect = 0.042
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Frame = +1
Query: 274 VFHQILDDFYYCIEFVW*IWACEPLLFYTGFLLFLQSISDMASINSFVLLSNKSRHRISF 453
+ +++L FY IW C+ +FY+ ++F+ S S S+ N+ I
Sbjct: 195 LLNEVLHPFYLFQAVSVLIWLCDSFVFYSCCIVFISSYSIFLSVKESKESENRIHSIIGA 254
Query: 454 PDKLLLFVQLLSKT--*DRHVAGKPADYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLS 621
P + + + +T D V G D Y + C + G+L L+D +++
Sbjct: 255 PQPVTVIRNQVKQTVLADDLVIG---DLLYFSNLDLKTCPVDGILFSSSCLLDESMVT 309
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -1
Query: 509 TCRSQVFESSCTKSNSLSGNEILCLDLLDSKTKLLMDAISEI 384
TC + +FES C+++ + N + C+D + K+L++ +I
Sbjct: 1103 TCINGIFESLCSENENTRSNALSCIDHYLNAHKMLLNTTLDI 1144
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 29.5 bits (63), Expect = 0.52
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -1
Query: 629 YNTESTIGSINTGNLTSNPMITQHTQLNKSM*K*SAGFPATCRSQVFESSCTK-SNSLSG 453
+ STI SI+ NLT+ P+ + KS K PAT R + +CT+ + L+G
Sbjct: 110 FKQSSTIPSISKSNLTNPPL-----ESEKSSDKALLTRPATSRRRCCHPTCTRITLRLAG 164
Query: 452 NEILCLDLLDSKTKLLMD 399
N + C + +L+ D
Sbjct: 165 NCLHCNGRFCAAHRLMED 182
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -1
Query: 680 VPNQNDTITSLLS*HHTYNTESTIGSINTGNLTSNPMITQHTQLNKSM 537
VP+ NDT L S H ++S I + P HT L+KS+
Sbjct: 621 VPSANDTSKQLASLHDMRKSQSPI-CARSATSAGLPRFEYHTSLSKSL 667
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +1
Query: 553 WVCCVIIGLLVKLPVLMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKAMY 699
WV C++IG+ + + +L+ P VL +W ++ + +I F F + +A+Y
Sbjct: 173 WVMCMVIGIPLLIFLLISP-VLQTPALW-EIVETMITLFQF-AQIQALY 218
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 538 MLLFNWVCCVIIG-LLVKLPVLMDPMVLSVLYVWC 639
+LLF W+C ++ LLV +P+ + +Y WC
Sbjct: 964 LLLFCWICSTLVTVLLVFVPLSLG----RAIYAWC 994
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 448 SFPDKLLLFVQLLSKT*DRHVAGKPADYFYMLLFNWVCCVIIGLLVKLPVLM 603
S P L +V S+T AG +F LF + I+G LV P+L+
Sbjct: 61 SSPFGLFAYVVKRSETYLIQYAGVDGYFFIRYLFTFGALCILGCLVLFPILL 112
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 470 FLYNYSQRLETGMLQGSQLTISTCFCLIG 556
F YN+ Q + +GS + +S CL+G
Sbjct: 933 FPYNHMQTMTVSGAKGSNVNVSQISCLLG 961
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 395 WRPLTALFYYPINPGTGFHFLINCYFLYNY 484
W+ L AL PI F+ L+ CY++Y+Y
Sbjct: 446 WKLLVALGMTPIL--YSFYALLCCYYIYSY 473
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 361 GFLLFLQSISDMASINSFVL--LSNKSRHRISFPDKLLLFVQLLSKT*DRHVAGKPA 525
G +L + SI S+ +F L KS+H+IS P+K + + D + AG PA
Sbjct: 431 GNVLLMTSIDGFCSVITFEPGELGVKSQHKISLPEKRSASPSSIDDSQD-NTAGGPA 486
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 269 VPFFTRYWMTFTIVLSLFGKFGLVS-PYYFI---LDFYYFFNQFQIWRP 403
VP+ TR ++TF+I L+ + G++S P + Y +N IW P
Sbjct: 1173 VPYNTRNFITFSIPRLLYEQGGILSVPGLNTSRGFETKYLYNLMNIWNP 1221
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 168 DIYDIVLCNNKSVCANEIIRKSWKMSE 248
D+Y+ + +N+S +II ++WK +E
Sbjct: 43 DVYNHEIYSNQSAAIPKIIHQTWKTNE 69
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 343 AHKPKFTKQTQYNSKSHPISGEKRYTIVPIRNS 245
A K FT++ YNS SHPI+ ++P++ S
Sbjct: 832 AAKSAFTRK--YNSSSHPIAFFGSSDVLPMKGS 862
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,881
Number of Sequences: 5004
Number of extensions: 72331
Number of successful extensions: 217
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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