Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1466
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725... 50 2e-06
05_01_0594 - 5337804-5337976,5338282-5338436,5338591-5338745,533... 40 0.002
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 30 2.2
04_01_0286 + 3800617-3801720,3801945-3801989,3802063-3802203,380... 30 2.2
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 29 5.1
06_03_0501 + 21476715-21476785,21477045-21477786,21478097-214782... 29 5.1
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169... 28 6.7
09_04_0415 - 17396118-17396410,17396881-17397082 28 6.7
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868... 28 6.7
05_03_0089 - 8327044-8327142,8327238-8327306,8327413-8327504,832... 28 6.7
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 28 8.8
01_01_0593 + 4416283-4417403,4417516-4417927 28 8.8
>03_06_0709 -
35670153-35670350,35671206-35671259,35672444-35672527,
35672688-35672902,35673959-35674058,35674178-35674276
Length = 249
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/90 (26%), Positives = 43/90 (47%)
Frame = +2
Query: 248 IPNWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYP 427
+ WY +P TR ++T +V ++ ++SPY+ L+ ++IWR +T Y+
Sbjct: 5 VEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYF- 63
Query: 428 INPGTGFHFLINCYFLYNYSQRLETGMLQG 517
FL + +FL Y + LE +G
Sbjct: 64 --RKMDLDFLFHMFFLARYCKLLEENSFRG 91
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Frame = +1
Query: 514 GKPADYFYMLLFNWVCC---VIIGLLV--------KLPVLMDPMVLSVLYVWCQLNKDVI 660
G+ AD+FYMLLF V+IG ++ ++ L + + ++YVW + N +
Sbjct: 91 GRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIH 150
Query: 661 VSFWFGTRFKAMYLPWVLLAF 723
+SF F A YLPWVLL F
Sbjct: 151 MSFLGLFTFTAAYLPWVLLGF 171
>05_01_0594 -
5337804-5337976,5338282-5338436,5338591-5338745,
5338864-5338992,5339096-5339189,5339293-5339366,
5339716-5339851,5341546-5341562
Length = 310
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 517 KPADYFYMLLFNWVCCVIIGLLVKLPV--LMDPMVLSVLYVWCQLNKDVIVSFWFGTRFK 690
+ AD+ +M++F + + + + L + L PMV +LYVW + + +S + + +
Sbjct: 91 RTADFLWMMIFGAISLLALSAIPFLDIYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLR 150
Query: 691 AMYLPWVLL 717
+ YLPW +L
Sbjct: 151 SFYLPWAML 159
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/86 (23%), Positives = 41/86 (47%)
Frame = +2
Query: 257 WYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINP 436
+YN +P ++ + T ++ + +++P + L + + F +FQIWR T+ F+
Sbjct: 7 YYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFL---G 63
Query: 437 GTGFHFLINCYFLYNYSQRLETGMLQ 514
+F I + Y +LE G +
Sbjct: 64 KFSINFGIRLLMIARYGVQLEKGAFE 89
>04_04_1571 +
34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 422 YPINPGTGFHFLINCYFLYNYSQRLETGMLQGSQLTISTCFCLIGCAVLSLDYLSNCQY 598
+PI P T H Y S+ + TG L + T +GC +L YLS CQ+
Sbjct: 703 WPILPSTSGHL----YRASTVSKLINTGSLSNLMKELLT---KLGCKILDTKYLSTCQH 754
>04_01_0286 +
3800617-3801720,3801945-3801989,3802063-3802203,
3802368-3802397,3802519-3803025
Length = 608
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +2
Query: 200 ISLCQRNNQKILENVGIPNWY-----NGVPFFTRYWM 295
+S Q + K +N +PNWY N +P FT W+
Sbjct: 21 LSFFQTGSSKSSDNTTLPNWYLGIWFNNIPKFTTVWV 57
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 371 YFFNQFQIWRPLT--ALFYYPINP 436
+ FN++Q WRP + LF YP +P
Sbjct: 226 FAFNRYQFWRPASYYKLFRYPFDP 249
>06_03_0501 +
21476715-21476785,21477045-21477786,21478097-21478246,
21478350-21478589,21479968-21480048,21480144-21480185,
21480953-21481033,21481271-21481368,21482574-21482667,
21482733-21482861,21483881-21483931,21484023-21484049,
21484280-21484387,21484956-21485201
Length = 719
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = -1
Query: 674 NQNDTITSLL------S*HHTYNTESTIGSINTGNLTSNPMITQHTQLNKSM 537
N+ DTIT+ + HH NTE TI S+ +GN+ NP + T + +
Sbjct: 567 NEYDTITAFQVSFVCGTRHHVMNTEHTIISLGSGNM-GNPQQMEGTNYQECL 617
>11_03_0226 -
11908455-11908562,11915971-11916240,11916463-11916946,
11917148-11918060,11918628-11919300
Length = 815
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 SCTKSNSLSGNEILCLDLLDSKTK 411
SCTKS +L GN +L ++DS K
Sbjct: 133 SCTKSTNLKGNGLLARRIVDSVAK 156
>09_04_0415 - 17396118-17396410,17396881-17397082
Length = 164
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = -3
Query: 333 PNLPNKLNTIVKV----IQYLVKNGTPLYQFGIPTFSKIF*LFRWHKLIY--YYTVQCHK 172
PNL + +TIV++ I Y T +QFGI F RWH+ Y + C +
Sbjct: 42 PNLEVQQDTIVRLMHIQIHYKTAPFTGWFQFGIIGFGGATAQHRWHRRRYLRFINRSCRQ 101
Query: 171 Y 169
Y
Sbjct: 102 Y 102
>05_03_0355 -
12885898-12886290,12886351-12886644,12886744-12886871,
12886952-12888482
Length = 781
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 SCTKSNSLSGNEILCLDLLDSKTK 411
SCTKS +L GN +L ++DS K
Sbjct: 143 SCTKSTNLKGNGLLARRIVDSVAK 166
>05_03_0089 -
8327044-8327142,8327238-8327306,8327413-8327504,
8327932-8329042
Length = 456
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 517 KPADYFYMLLFNWVCCVIIGLLVKL 591
KPA Y L NW C +IIG+L+ L
Sbjct: 412 KPAKYSLSWLMNW-CFIIIGMLLML 435
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 430 KSRHRISFPDKLLLFVQLLSKT*DRHVAGKPADYFYMLLFNWVCCVIIGL 579
K +H + +L L + LL+ R + K +FY LLF + +++GL
Sbjct: 644 KKKHNRIYKKELALSLLLLTAA-ARSLLSKQGIHFYFLLFQGISFLLVGL 692
>01_01_0593 + 4416283-4417403,4417516-4417927
Length = 510
Score = 27.9 bits (59), Expect = 8.8
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -1
Query: 275 TVHHCTNSEFRHFPRFSDY 219
TV+HC N+ F+++P+ S++
Sbjct: 93 TVNHCFNANFKNYPKGSEF 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,781
Number of Sequences: 37544
Number of extensions: 373975
Number of successful extensions: 825
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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