Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1466
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041)             29   3.9  
SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   5.2  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   6.8  
SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   9.0  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)                     28   9.0  

>SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041)
          Length = 855

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +1

Query: 541 LLFNWVCCVIIGLLVKLPVLMDPMVLSVLYV 633
           L ++W+  V+I +L+ L +++ P + +V+Y+
Sbjct: 239 LSYDWLIWVLINMLIPLDMVLFPFIFAVMYL 269


>SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 712

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -2

Query: 244 DIFQDFLIISLAQTDLLLHSTMS*ISVFRYFRLFSYF 134
           +IF  F+++ L+ T+LLL +  + +SVFR  RL   F
Sbjct: 262 NIFDGFVVV-LSVTELLLENGYARLSVFRSIRLLRIF 297


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 434 PGTGFHFLINCYFLYNYSQRLETGMLQGSQLTISTCFCLIGCAVLSLDYLS 586
           PGT F +L+   FL     R   G++QG + T  +   L  CAV+ L +L+
Sbjct: 819 PGTIFLYLVTVLFL----SRRSNGVVQGLRHTSGSISSLWRCAVMGLLHLA 865


>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1457

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 244 DIFQDFLIISLAQTDLLLHSTMS*ISVFRYFRLFSYF 134
           +IF  F ++ L+ T+LLL +  + +SVFR  RL   F
Sbjct: 519 NIFDGF-VVGLSVTELLLENGYARLSVFRSIRLLRIF 554


>SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 350

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 287 YWMTFTIVLSLFGKFGLVS-PYYFILDF 367
           Y+M FT+++  FG  G ++  YY IL F
Sbjct: 167 YYMFFTVIICFFGPLGTMAFCYYKILSF 194


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -2

Query: 346  RAHKPKFTKQTQ--YNSKSHPISG 281
            +++ P  T QTQ  YNS+S+P+SG
Sbjct: 1820 QSYAPSATSQTQTSYNSQSYPVSG 1843


>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 260  YNGVPFFTRYWMTFTIVLSLF 322
            Y  VP F  YW+   ++L LF
Sbjct: 1231 YTIVPIFANYWLAIVVILPLF 1251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,757,278
Number of Sequences: 59808
Number of extensions: 481236
Number of successful extensions: 1089
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)