Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1466
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78418-1|CAB01696.1| 245|Caenorhabditis elegans Hypothetical pr... 106 2e-23
U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical p... 57 1e-08
AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH... 57 1e-08
Z81030-14|CAJ43441.1| 75|Caenorhabditis elegans Hypothetical p... 31 1.1
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 29 3.4
AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of... 29 3.4
AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin reu... 29 4.5
Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z68222-7|CAA92504.2| 568|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z78418-1|CAB01696.1| 245|Caenorhabditis elegans Hypothetical
protein F25D7.1 protein.
Length = 245
Score = 106 bits (254), Expect = 2e-23
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Frame = +2
Query: 248 IPNWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYP 427
+ N+ G+P TRYW + ++ L G+FG ++ + L + N+FQ WRPLTAL YYP
Sbjct: 3 LENFLLGIPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYYP 62
Query: 428 INPGTGFHFLINCYFLYNYSQRLETGMLQGS------QLTISTCFCLIGCAVLSLDYL 583
+ P TGFH+L+ CYFLYNYS+ LE+ +G L + FC C L + +L
Sbjct: 63 VTPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDIYFL 120
Score = 102 bits (245), Expect = 2e-22
Identities = 42/70 (60%), Positives = 53/70 (75%)
Frame = +1
Query: 514 GKPADYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKA 693
G+ ADY +ML+FNW C + + + + L++PMV+SVLYVWCQ+NKD IVSFWFG RF A
Sbjct: 92 GRSADYLFMLIFNWFFCSGLCMALDIYFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPA 151
Query: 694 MYLPWVLLAF 723
YLPWVL F
Sbjct: 152 RYLPWVLWGF 161
>U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical
protein R151.6 protein.
Length = 237
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/70 (35%), Positives = 41/70 (58%)
Frame = +1
Query: 514 GKPADYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKA 693
G+ AD+ YM LF V ++ G+ V++ L + ++Y+W + N + ++F+ F A
Sbjct: 90 GRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTA 149
Query: 694 MYLPWVLLAF 723
YLPWVLL F
Sbjct: 150 PYLPWVLLLF 159
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/102 (25%), Positives = 47/102 (46%)
Frame = +2
Query: 269 VPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGF 448
+P TR++ ++L+ V+P++ ++ ++Q WR +T+ ++ GF
Sbjct: 11 MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFF---GSFGF 67
Query: 449 HFLINCYFLYNYSQRLETGMLQGSQLTISTCFCLIGCAVLSL 574
FL N F Y Y LE G +G + F L G ++ L
Sbjct: 68 SFLFNMIFTYRYCMMLEEGSFRGRRADFVYMF-LFGAVLMIL 108
>AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH
oxidoreductase complexI subunit protein.
Length = 237
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/70 (35%), Positives = 41/70 (58%)
Frame = +1
Query: 514 GKPADYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKA 693
G+ AD+ YM LF V ++ G+ V++ L + ++Y+W + N + ++F+ F A
Sbjct: 90 GRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTA 149
Query: 694 MYLPWVLLAF 723
YLPWVLL F
Sbjct: 150 PYLPWVLLLF 159
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/102 (25%), Positives = 47/102 (46%)
Frame = +2
Query: 269 VPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGF 448
+P TR++ ++L+ V+P++ ++ ++Q WR +T+ ++ GF
Sbjct: 11 MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFF---GSFGF 67
Query: 449 HFLINCYFLYNYSQRLETGMLQGSQLTISTCFCLIGCAVLSL 574
FL N F Y Y LE G +G + F L G ++ L
Sbjct: 68 SFLFNMIFTYRYCMMLEEGSFRGRRADFVYMF-LFGAVLMIL 108
>Z81030-14|CAJ43441.1| 75|Caenorhabditis elegans Hypothetical
protein C01G10.17 protein.
Length = 75
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 302 TIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINC 466
T++ +L F YY +YY N + T +YYP N G+++ C
Sbjct: 5 TLIATLLVLFAATDAYYTY--YYYPNNNYNNNNGYTTYYYYPNNNNNGYYYNNGC 57
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 595 VLMDPMVLSVLYVWCQLNK---DVIVSFWFGTRFKAMYLPWVLLAFQ 726
V+ +P V ++C N D + S + FK+MYLPW++ +
Sbjct: 946 VIENPRYTDVDSIFCSTNDEDYDTVESGISRSSFKSMYLPWIMYCIE 992
>AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 5 protein.
Length = 671
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Frame = +2
Query: 290 WMTFT---IVLSLFGKFGLVSP------YYFILDFYYFFNQFQIWRPLTALFYYPINPGT 442
W+T T I+LS+ GL+ P YY++ + +W ++ + PG
Sbjct: 307 WVTATAPYIILSILLIRGLLLPGAKNGLYYYVTPDFEKLKDPAVWSAAATQIFFSLGPGF 366
Query: 443 GFHFLINCYFLYNYSQRLETGMLQGSQLTISTCFCLIGCAVLS-LDYLS 586
G ++ Y +++ + S + +T F GC V S L Y+S
Sbjct: 367 GVLLALSSY--NDFNNNCYRDAVTTSIINCATSF-FSGCVVFSTLGYMS 412
>AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin
reuptake transporter protein.
Length = 671
Score = 28.7 bits (61), Expect = 4.5
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Frame = +2
Query: 290 WMTFT---IVLSLFGKFGLVSP------YYFILDFYYFFNQFQIWRPLTALFYYPINPGT 442
W+T T I+LS+ GL+ P YY++ + +W ++ + PG
Sbjct: 307 WVTATAPYIILSILLIRGLLLPGAKNGLYYYVTPDFEKLKDPAVWSAAATQIFFSLGPGF 366
Query: 443 GFHFLINCYFLYNYSQRLETGMLQGSQLTISTCFCLIGCAVLS-LDYLS 586
G ++ Y +N + + + S + +T F GC V S L Y+S
Sbjct: 367 GVLLALSSYNDFNNNCYRDAVTI--SIINCATSF-FSGCVVFSTLGYMS 412
>Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical
protein C14A4.3 protein.
Length = 603
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +2
Query: 395 WRPLTALFYYPINPGTGFHFLINCYFL 475
W+P+ +L + ++ TGFH L+ +++
Sbjct: 556 WKPVDSLPFIDVSKSTGFHGLLRAFYV 582
>Z68222-7|CAA92504.2| 568|Caenorhabditis elegans Hypothetical
protein ZK1251.8 protein.
Length = 568
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 526 DYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLSVLYV 633
D+F L FN+V IGL +P D ++++++Y+
Sbjct: 342 DFFKALYFNFVTLTTIGLGDFVPKSFDYLLITLIYI 377
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 4 KSIQFQ*LEFSTQIRFVHVYFILLFNISSSVFTRNIMIIQF 126
KS F + F T + + +YF+L NI S ++ NI+ F
Sbjct: 44 KSAVFGCMNFLTHLDMITMYFVLFLNILHSNWSINILYSVF 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,375,488
Number of Sequences: 27780
Number of extensions: 388499
Number of successful extensions: 1065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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