Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1465
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    27   3.4  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   4.5  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    26   4.5  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    26   5.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.8  

>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 330 SFCVDDLRLYCGNDDQGNKVFS-GSKRVSRWITGHVSELHDV 208
           +F  D   L  G +DQ  +++    KRV R +TGH  E++ +
Sbjct: 341 AFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSL 382


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 509 FWIVWSLRII*SRV--VLLRVILPRNDRIVWSWVA 411
           FW   +LRII S    VLL+ ++ + D+I+ +W A
Sbjct: 236 FWDSSTLRIICSHTYQVLLKHLITKGDKIMVAWYA 270


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 184 EGLISTIIDIMEFRHMPRDP 243
           E  I T+ +IME R  PRDP
Sbjct: 327 EAAILTLAEIMEIRASPRDP 346


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 376 TAPDTPINRSIPATQDQTIRSFLGKITLSRTTLDQIILSDHTIQKNYH 519
           T+  TP+  S+ +TQ  T+R  + ++     TL +   +  T+    H
Sbjct: 43  TSTWTPVVSSVTSTQTDTLRVTISEVVSVTATLTETFTATPTVTSVVH 90


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 333  NSFCVDDLRLYCGNDDQGNKVFSGSKRVSRW 241
            N F +D L+     D+  N+V++ + R+ +W
Sbjct: 1879 NEFYIDSLKANDAIDECSNEVYASAWRMQKW 1909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,830
Number of Sequences: 5004
Number of extensions: 54427
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)