Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1464
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    26   7.1  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    26   7.1  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   9.4  

>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +3

Query: 375 TAPDTPINRSIPATQDQTIRSILGKITLSRTTLDQIILSDHTIQRNYH 518
           T+  TP+  S+ +TQ  T+R  + ++     TL +   +  T+    H
Sbjct: 43  TSTWTPVVSSVTSTQTDTLRVTISEVVSVTATLTETFTATPTVTSVVH 90


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 183 RRPYIHHNRHHGVPNMPRDP 242
           ++PY+H +RH      PR P
Sbjct: 41  KKPYLHESRHKHAMRRPRGP 60


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/36 (22%), Positives = 23/36 (63%)
 Frame = +3

Query: 372 LTAPDTPINRSIPATQDQTIRSILGKITLSRTTLDQ 479
           L AP+  +N+S  +  ++TI  ++ + T+++  +++
Sbjct: 455 LIAPEINVNKSFGSVNNETITEMVSEFTVTKDMIEK 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,587
Number of Sequences: 5004
Number of extensions: 63479
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)