Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1464
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229...    29   4.3  
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    29   4.3  
03_04_0045 + 16772835-16772876,16772965-16773118,16774219-167742...    29   5.6  
01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820     29   5.6  
05_04_0262 - 19514426-19515625                                         28   7.4  
02_01_0746 + 5554686-5556179                                           28   7.4  
02_01_0211 - 1406098-1406227,1406581-1406714,1407241-1407380,140...    28   7.4  
01_07_0005 + 40364385-40364732,40365299-40365448                       28   9.8  

>11_04_0365 -
           16818468-16818514,16818619-16821706,16822860-16822919,
           16823595-16823954
          Length = 1184

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 426 TIRSILGKITLSRTTLDQIILSDHTIQRNY 515
           ++ +I+G   L +TTL Q++ +D T+ R+Y
Sbjct: 237 SVLAIVGMGGLGKTTLAQLVYNDQTVHRSY 266


>10_08_0573 +
           18872720-18872781,18873261-18873610,18873917-18874334,
           18875172-18877180,18877390-18877398,18880291-18880398,
           18880399-18880469,18880769-18881785
          Length = 1347

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 423 QTIRSILGKITLSRTTLDQIILSDHTIQRNYHYYSKAHAA 542
           Q +  ILG+  + +TT+ Q+I++D  + R++     AH +
Sbjct: 136 QRLLPILGEAYIGKTTVAQLIINDKRVSRHFDVRIWAHVS 175


>03_04_0045 +
           16772835-16772876,16772965-16773118,16774219-16774248,
           16774752-16774882,16774960-16775034,16775315-16775482,
           16775837-16775984,16776808-16776953
          Length = 297

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 183 RRPYIHHNRHHGVPNMPRDPSRNPFTTREDLI 278
           R+PY+H +RHH      R  S   F T+++L+
Sbjct: 199 RKPYLHESRHHHAMKRARG-SGGRFLTKKELL 229


>01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820
          Length = 357

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 189 PYIHHNRHHGVPNMPRDPSR 248
           P+ HH+ HH  P +P  P R
Sbjct: 297 PWHHHHHHHHEPTLPTPPQR 316


>05_04_0262 - 19514426-19515625
          Length = 399

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = +2

Query: 632 SYSKTGITGGSEL-----TVDILVTNGNN*NVVQFTKKSNTRGRCL*KTDKHIAI 781
           SYS T +TGGS+      TV  LV+ G    V + T  +NTRG  +  T+K  A+
Sbjct: 39  SYSSTAVTGGSDPEPCPDTVSYLVSCGLPPAVARHT-AANTRGLRIRSTEKADAV 92


>02_01_0746 + 5554686-5556179
          Length = 497

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 408 PATQDQTIRSILGKITLSRTTLDQIILSDHTIQRNY 515
           PA  +  + SI+G+  L +TTL Q +  D  ++R +
Sbjct: 184 PAAAELGVLSIIGRSGLGKTTLVQHVCDDPAVRRRF 219


>02_01_0211 -
           1406098-1406227,1406581-1406714,1407241-1407380,
           1407639-1407829,1408853-1409346
          Length = 362

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 198 HHNRHHGVPNMPRDPSRNP 254
           HH+RHH +P +P  P   P
Sbjct: 18  HHHRHHRLPLLPSQPRPRP 36


>01_07_0005 + 40364385-40364732,40365299-40365448
          Length = 165

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -1

Query: 439 IDRIVWSWVAGILRFIGVSGAVSYCVRGSLNSRVIVIRSAWMIFGCIVVMTIRVIRSS 266
           I  ++  WVAG+    G+S AVS    G +  +     S+ ++    +++TI++ + S
Sbjct: 77  IGLLLMPWVAGVALLFGLSAAVSTLSSG-VFGKAAAAASSPVVTDLSLIITIKIFKRS 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,045,595
Number of Sequences: 37544
Number of extensions: 405774
Number of successful extensions: 913
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)