Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1464
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0)               37   0.022
SB_51542| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_55325| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)                     29   3.3  
SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)                   29   3.3  
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     29   4.3  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 29   4.3  
SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)           29   5.7  
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
          Length = 556

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 577 PNTCDTNYDAVALIR-GELFIFKDRYHWRIGAHGRYPGY 690
           P+TC T+ D V +   G  + FKD Y W++   G  PGY
Sbjct: 292 PDTCTTDLDTVVVAGDGNTYAFKDAYVWKLRETGFAPGY 330


>SB_51542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 29/94 (30%), Positives = 39/94 (41%)
 Frame = +3

Query: 192 YIHHNRHHGVPNMPRDPSRNPFTTREDLITLIVITTIQPKIIHAERITITLELRLPRTQ* 371
           Y HHN HH        P  N  TT     T+ + TTI   I     IT T+ +    T  
Sbjct: 77  YRHHNHHH-QSTQSSSPPVNTITT-----TITITTTITIIITTINTITTTITITTTITII 130

Query: 372 LTAPDTPINRSIPATQDQTIRSILGKITLSRTTL 473
           +T  +T I  +I  T   TI  I+  +    TT+
Sbjct: 131 ITTVNT-ITTTITIT--TTITIIITTVNTITTTI 161


>SB_55325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 636 IQRQVSLEDRSSRSISWLPMEITRMWSSLPKNLTHVDAVYERQINILLS 782
           I+  +     SS+ +  +P +  R WSS  + LTH + + E  +N L+S
Sbjct: 131 IRADIDATSLSSQDVELVPPD--RPWSSENRTLTHFNTLSESDVNDLMS 177


>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
          Length = 1311

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 636 IQRQVSLEDRSSRSISWLPMEITRMWSSLPKNLTHVDAVYERQINILLS 782
           I+  +     SS+ +  +P +  R WSS  + LTH + + E  +N L+S
Sbjct: 456 IRADIDATSLSSQDVELVPPD--RPWSSENRTLTHFNTLSESDVNDLMS 502


>SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 636 IQRQVSLEDRSSRSISWLPMEITRMWSSLPKNLTHVDAVYERQINILLS 782
           I+  +     SS+ +  +P +  R WSS  + LTH + + E  +N L+S
Sbjct: 470 IRADIDATSLSSQDVELVPPD--RPWSSENRTLTHFNTLSESDVNDLMS 516


>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +1

Query: 289 SLPQYNRRSSTQNELQLPSN*DYHARNNLPPPIPL*TGVSQLPKTKLSGR 438
           S P Y R +       LP     HA+   PPP     G + LP+T  SGR
Sbjct: 309 SEPGYVRSAVATTSHSLPRG-PVHAKKGPPPPTLPKRGTATLPRTSSSGR 357


>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
          Length = 1575

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 313 IFGCIVVMTIRVIRSSRVVNGFLDGSRG 230
           IF C+ ++T+  + SS+VVN  L G  G
Sbjct: 229 IFSCMAIVTLINVASSKVVNDILHGKLG 256


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
 Frame = +3

Query: 225 NMPRDPSRNPFTTREDLITLIVITTIQPKIIHAERITITLELRLPRTQ*LTAP------- 383
           N P +P  +P  T    + L     +QP         +T   RLP T   T         
Sbjct: 279 NYPENPGHSPNRTLSSPVLLTAPAKVQPSTPTPTPTCMTPLNRLPPTPSPTTTHAIPQAY 338

Query: 384 -DTPINRSIPATQDQTIRSILGKITLSRTTLDQI 482
             TP+N+S  A ++Q + S+ G    +    DQI
Sbjct: 339 VSTPVNQSTVANREQALPSV-GSFIRTTNCADQI 371


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 106  HFLLFNFGHTFVECHYDHLQVIQS*LNTLMYPW 8
            +++LF FGH+ +     H+ VI    N+ + PW
Sbjct: 965  YYILFKFGHSQLNVPAHHVTVILCMFNSCINPW 997


>SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1036

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 423 QTIRSILGKITLSRTTLDQIILSDHTIQRNYHYYSK 530
           QT+   LGK+     TLD+I+ + HT++ ++  Y +
Sbjct: 169 QTVFEHLGKVLTVLITLDEILDASHTLKDHWKLYRR 204


>SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)
          Length = 341

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 346 SRVIVIRSAWMIFGCIVVMTIRVIRSSRVVNGFLD--GSRGMFGTP*CLL 203
           +RVI+ ++ +++ G ++   +R I   R  N FL+  GS G   T  C++
Sbjct: 146 TRVIINQTLFVLVGMVLCFAVRKITKIRTSNLFLEGQGSTGCQATAICII 195


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 432  RSILGKITLSRTTLDQIILSDHTIQR 509
            R  L +ITLSR TL + ILS  T+ R
Sbjct: 1106 RVTLSRITLSRVTLSRFILSGVTLSR 1131


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 364 VRGSLNSRVIVIRSAWMIFGCIVVMTIRVIRSSRVVNGFLDGSRGM 227
           +R S+  R+      W  F     M IR+   +R  NGFLDG RG+
Sbjct: 75  MRTSVKVRLHRGNGGWRAFDARFTMEIRITLLNRQHNGFLDG-RGV 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,363,534
Number of Sequences: 59808
Number of extensions: 474861
Number of successful extensions: 1180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)