Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1464
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41266-1|AAM48565.1|  521|Caenorhabditis elegans Zinc metallopro...    31   0.72 
AB007817-1|BAA28353.1|  521|Caenorhabditis elegans matrix metall...    31   0.72 
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    30   1.7  
U88180-7|AAB42297.2|  789|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U41266-1|AAM48565.1|  521|Caenorhabditis elegans Zinc
           metalloprotease protein 1 protein.
          Length = 521

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 574 KPNTCDTNYDAVALIRGELFIFKDRYHWRIGA 669
           +PN C      V   RGE  IFK ++ WR+ +
Sbjct: 297 RPNECRVENPIVVQYRGEYLIFKSQWVWRVSS 328


>AB007817-1|BAA28353.1|  521|Caenorhabditis elegans matrix
           metalloproteinase protein.
          Length = 521

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 574 KPNTCDTNYDAVALIRGELFIFKDRYHWRIGA 669
           +PN C      V   RGE  IFK ++ WR+ +
Sbjct: 297 RPNECRVENPIVVQYRGEYLIFKSQWVWRVSS 328


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/84 (29%), Positives = 40/84 (47%)
 Frame = +3

Query: 285  IVITTIQPKIIHAERITITLELRLPRTQ*LTAPDTPINRSIPATQDQTIRSILGKITLSR 464
            I+I  + PK I   +ITI  E+   R   L  P +  N  IP+      +S +GKI + R
Sbjct: 1164 ILIVAVIPKGIAKAKITI--EVIEDR---LILPQS--NFFIPSPPSFNSKSKIGKIPIDR 1216

Query: 465  TTLDQIILSDHTIQRNYHYYSKAH 536
              +   ++ +H   RN+  + K H
Sbjct: 1217 DDVTIDVIDEHFYVRNFEIFVKRH 1240


>U88180-7|AAB42297.2|  789|Caenorhabditis elegans Hypothetical
           protein T27A3.2 protein.
          Length = 789

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 699 FPLVTRISTVSSDPPVIPVFEYEE 628
           FPLV ++ T+SS+  +I V+ Y+E
Sbjct: 234 FPLVVKLGTISSNLELIDVYSYDE 257


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 216 GVPNMPRDPSRNPFTTREDL 275
           G+PNMP  P   PF + EDL
Sbjct: 579 GIPNMPETPYSAPFFSDEDL 598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,205,213
Number of Sequences: 27780
Number of extensions: 349101
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)