Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1462
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.69 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.7  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   6.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   8.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 65  IRPDHGYNAESRAIRMLIDILASYNR 142
           + P  G +A S A R+  D+L++YNR
Sbjct: 9   VAPFPGASANSEAKRLYDDLLSNYNR 34


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 778 NISNNYCNSQFSQEVDLNNNYI 843
           N SNNY N+   +++  N NYI
Sbjct: 312 NYSNNYYNNNNYKKLYYNINYI 333


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 769 FTENISNNYCNSQFSQEVDLNNNYI 843
           +  NISN   N+ +++++  N NYI
Sbjct: 89  YISNISNYNNNNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 769 FTENISNNYCNSQFSQEVDLNNNYI 843
           +  NISN   N+ +++++  N NYI
Sbjct: 327 YISNISNYNNNNNYNKKLYYNINYI 351


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 167  FVTGSPRLPTGGFKALNPP 223
            F+ G P LP   F   NPP
Sbjct: 1149 FMEGMPHLPFTPFNFWNPP 1167


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 769 FTENISNNYCNSQFSQEVDLNNNYI 843
           F +   + YC  +F ++ D N +YI
Sbjct: 422 FFQQFFHCYCPVRFGRKADPNGDYI 446


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +1

Query: 520 NVYVQSEPIFYNV 558
           +V V++EPI+YN+
Sbjct: 203 DVLVETEPIYYNL 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,605
Number of Sequences: 438
Number of extensions: 5753
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)