Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1461
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 79 5e-15
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 72 6e-13
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 68 7e-12
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 42 7e-04
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 40 0.002
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 40 0.002
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 30 2.3
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 29 4.0
03_01_0239 + 1859446-1860112,1861218-1861338,1861431-1861618,186... 29 4.0
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 29 5.3
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 78.6 bits (185), Expect = 5e-15
Identities = 37/73 (50%), Positives = 50/73 (68%)
Frame = +2
Query: 23 GRDQRRDPRMLAE*MRPDHGYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGG 202
GR + +P L + ++ DHGY A+S I L++I+A + E+Q F QFVTG+PRLP GG
Sbjct: 1648 GRREIWEPDSLVDNIKFDHGYTAKSPAIVNLLEIMAEFTPEQQHAFCQFVTGAPRLPPGG 1707
Query: 203 FKALNPPLTVVRK 241
ALNP LT+VRK
Sbjct: 1708 LAALNPKLTIVRK 1720
Score = 57.6 bits (133), Expect = 1e-08
Identities = 34/57 (59%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Frame = +1
Query: 241 IAGVLLDPDEYLPSVMTCVNYLKLPDYS------SAEVMRAKLRLAASEGQHSFHLS 393
IAGV D+ LPSVMTC NYLKLP YS S EVMR KL A EG+ SF LS
Sbjct: 1731 IAGVTESADDDLPSVMTCANYLKLPPYSTKVRFLSLEVMRKKLLYAILEGRGSFDLS 1787
>05_05_0136 - 22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 71.7 bits (168), Expect = 6e-13
Identities = 34/77 (44%), Positives = 47/77 (61%)
Frame = +2
Query: 23 GRDQRRDPRMLAE*MRPDHGYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGG 202
G D L + ++ DHGY + S + L++++ + ++R FLQF+TGSPRLP GG
Sbjct: 1362 GEQDTWDFAKLVDHIKFDHGYTSSSPPVINLLEVIQEFEGHQRRAFLQFITGSPRLPPGG 1421
Query: 203 FKALNPPLTVVRKSLES 253
ALNP LTVVRK S
Sbjct: 1422 LAALNPKLTVVRKQHNS 1438
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = +1
Query: 259 DPDEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSFHLS 393
+ D+ LPSVMTC NYLKLP YSS + MR KL A +EGQ SFHLS
Sbjct: 1440 EADDDLPSVMTCANYLKLPPYSSKDKMREKLLYAITEGQGSFHLS 1484
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 68.1 bits (159), Expect = 7e-12
Identities = 29/59 (49%), Positives = 41/59 (69%)
Frame = +2
Query: 74 DHGYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKALNPPLTVVRKSLE 250
D+GY+A S + ++IL + RE+QR FL F TG+P+LP GG +L+P LTVVRK +
Sbjct: 1217 DYGYDANSASVISFLEILREFGREDQRAFLHFTTGAPQLPLGGLASLDPKLTVVRKQCD 1275
Score = 52.4 bits (120), Expect = 4e-07
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +1
Query: 265 DEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSFHLS 393
D LPSV TC ++ KLP YSS E+MR KL+ A EG SF LS
Sbjct: 1279 DNELPSVNTCRHFFKLPPYSSKEIMRQKLKYAIKEGLGSFQLS 1321
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +2
Query: 80 GYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
GY+ S I +++ +++E+ FLQFVTG+ ++P GFKAL
Sbjct: 3534 GYSPASPVILWFWEVVNGFSKEDMARFLQFVTGTSKVPLEGFKAL 3578
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +1
Query: 268 EYLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSF 384
E LPS TC N L LP+YSS E + +L LA E F
Sbjct: 3597 ERLPSAHTCFNQLDLPEYSSKEQLEERLLLAIHEASEGF 3635
>05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 80 GYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKALNPPLTVVR 238
GY+ + I + ++L S++ Q+ FL+FVTG R P GF+ L P + R
Sbjct: 926 GYHPDHELIDIFWEVLKSFSSHNQKKFLKFVTGCSRGPLLGFQYLEPKFCIQR 978
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 241 IAGVLLDPDEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSFHLS 393
+ G+ + ++ LP+ TC+N LKLP Y + + +KL L A + F LS
Sbjct: 981 VPGMEEEDEDRLPTSATCMNLLKLPPYRNKTQLESKL-LYAINAEAGFDLS 1030
>03_05_0712 - 27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 80 GYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKALNPPLTV 232
GY SR +++ +++ + E+ L+FVT R P GFK L P T+
Sbjct: 1066 GYTESSRSVKLFWEVIKGFKPTERCMLLKFVTSCSRAPLLGFKYLQPSFTI 1116
Score = 36.3 bits (80), Expect = 0.026
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSFHLS 393
LPS TC N LKLP Y + +R+KL A S F LS
Sbjct: 1137 LPSASTCYNTLKLPTYKRSSTLRSKLLYAISSNT-GFELS 1175
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSFHL 390
LPS TC L LP Y S +V R +L+ E FH+
Sbjct: 793 LPSSHTCFYRLCLPAYPSLKVTRNQLQKITQEHASIFHI 831
>07_03_1772 +
29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 407 LGANYERWNECCPSEAASRSLARITSALL*SGSF 306
L +Y RW +CCP A + +A+ S S F
Sbjct: 436 LECHYNRWQKCCPDRAEAFEMAKGVSCFYWSIQF 469
>03_01_0239 +
1859446-1860112,1861218-1861338,1861431-1861618,
1861710-1861804
Length = 356
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 225 SGGFNALNPPVGSLGLPVTNCKKCRCSSRLYE 130
S N + P G+ G NC +C CSS Y+
Sbjct: 232 SADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQ 263
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 490 QNYNKISLTAFTRVYKGGDICNHSKRGNLEPIM 392
Q++N++ L V GGD C ++ LEPI+
Sbjct: 248 QDFNEVDLLRTAIVAAGGDHCGAQEKSLLEPIL 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,536,451
Number of Sequences: 37544
Number of extensions: 448273
Number of successful extensions: 899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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