Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1461
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25557| Best HMM Match : HECT (HMM E-Value=0) 61 8e-10
SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_12797| Best HMM Match : HECT (HMM E-Value=0) 41 0.001
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_5238| Best HMM Match : HECT (HMM E-Value=0) 38 0.009
SB_35146| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_44630| Best HMM Match : HECT (HMM E-Value=0) 36 0.036
SB_53819| Best HMM Match : HECT (HMM E-Value=4e-07) 36 0.047
SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_51591| Best HMM Match : HECT (HMM E-Value=0) 35 0.062
SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.082
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 34 0.14
SB_19247| Best HMM Match : HECT (HMM E-Value=5.3) 32 0.44
SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8) 32 0.44
SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22) 31 1.3
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0) 29 5.4
SB_9642| Best HMM Match : PSI (HMM E-Value=3.6) 29 5.4
SB_22229| Best HMM Match : Arm (HMM E-Value=0) 28 9.5
>SB_25557| Best HMM Match : HECT (HMM E-Value=0)
Length = 454
Score = 61.3 bits (142), Expect = 8e-10
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = +1
Query: 256 LDPDEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASE 369
L D YLPSVMTCVNYLKLPDY+S E+M KLR AA E
Sbjct: 290 LSADNYLPSVMTCVNYLKLPDYTSKEIMLDKLRTAAHE 327
Score = 32.7 bits (71), Expect = 0.33
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 200 GFKALNPPLTVVRKSLE 250
GF++LNPPLT+VRK+ E
Sbjct: 271 GFRSLNPPLTIVRKTFE 287
>SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1320
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 122 ILASYNREEQRHFLQFVTGSPRLPTGGFKALNPPLTV 232
I++S +EE LQFVTGS +LP GGF L+P L +
Sbjct: 836 IVSSLTQEELARLLQFVTGSSQLPPGGFAELSPQLQI 872
>SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +1
Query: 265 DEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSFHLS 393
++ LPS TC+N LKLP+Y + E+MR +L A G F LS
Sbjct: 487 EDRLPSASTCMNMLKLPEYPTDEMMRERLLYAVESGA-GFELS 528
>SB_12797| Best HMM Match : HECT (HMM E-Value=0)
Length = 749
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +2
Query: 74 DHGYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
D G +S IR +I+ S++ E++R L F TGS R+P GG L
Sbjct: 651 DGGLTKDSALIRWFWEIVHSFDMEQKRQLLMFTTGSDRIPVGGLAKL 697
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQ 375
LP+ TC N L LPDY++ E + +L A + +
Sbjct: 711 LPTAHTCFNVLLLPDYATKEKLEERLLKAITHAK 744
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +2
Query: 77 HGYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
H YN S I+ L S+++ + FLQFVTG+ ++P GF AL
Sbjct: 2396 HQYNENSLQIQWFWRALRSFDQAARAKFLQFVTGTSKVPLQGFAAL 2441
>SB_5238| Best HMM Match : HECT (HMM E-Value=0)
Length = 212
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 83 YNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
Y S+ + + +Y+ E++ LQFVTG+ RLP GGF L
Sbjct: 111 YTRNSKQVMWFWQAVKAYDNEKRIRLLQFVTGTCRLPVGGFTEL 154
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 265 DEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASE 369
+ +LP TC N L LP Y S E + KL A E
Sbjct: 171 ETWLPRSHTCFNRLDLPPYKSYEQLVEKLTFAIEE 205
>SB_35146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 262 PDEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLA 360
PD YLP TC LK+P YSS ++ KL+ A
Sbjct: 8 PDHYLPESYTCFFLLKMPRYSSHRILCEKLKYA 40
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 262 PDEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLA 360
PD YLP TC LK+P YSS ++ KL+ A
Sbjct: 3529 PDHYLPESYTCFFLLKMPRYSSHRILCEKLKYA 3561
>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
Length = 1003
Score = 35.9 bits (79), Expect = 0.036
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 74 DHGYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
D GY+A+ I+M ++ +++ L FVTGS R+P G L
Sbjct: 905 DDGYSAQHSTIKMFWNVFNEMTNHQKKALLMFVTGSDRVPLKGLSNL 951
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSFHLS 393
LP+ MTC N L LP+Y+S + ++ +L + A E F L+
Sbjct: 965 LPTAMTCFNRLLLPEYTSPKRLKERL-IVAIENSKGFGLT 1003
>SB_53819| Best HMM Match : HECT (HMM E-Value=4e-07)
Length = 279
Score = 35.5 bits (78), Expect = 0.047
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +2
Query: 77 HGYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
H YN S I+ L S+++ + FLQFVTG+ ++P GF AL
Sbjct: 156 HKYNENS--IQWFWRALRSFDQAARAKFLQFVTGTSKVPLQGFAAL 199
>SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 35.5 bits (78), Expect = 0.047
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 80 GYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGG 202
GY+ IR D + ++N + ++ L F TGS R+P GG
Sbjct: 187 GYSKNDNTIRYFWDTVMNFNTDLKKKMLLFATGSDRIPIGG 227
>SB_51591| Best HMM Match : HECT (HMM E-Value=0)
Length = 694
Score = 35.1 bits (77), Expect = 0.062
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 104 IRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
I L +AS EE+ L+F TGSP +P GGF AL
Sbjct: 599 ITWLWKTIASLKEEEKALLLKFSTGSPCVPIGGFAAL 635
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSF 384
+P TC N LKL +Y S + +R KL +A G F
Sbjct: 655 IPEASTCFNLLKLTNYESEKQLREKLLIAIRHGSEGF 691
>SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 131 SYNREEQRHFLQFVTGSPRLPTGGFKAL 214
+Y+ E++ LQFVTG+ RLP GGF L
Sbjct: 62 AYDNEKRIRLLQFVTGTCRLPVGGFTEL 89
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 34.7 bits (76), Expect = 0.082
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = +1
Query: 241 IAGVLLDPDEY------LPSVMTCVNYLKLPDYSSAEVMRAKLRLA 360
+ G+ L PD+ LP+ TC L+LP YSS E M +LR A
Sbjct: 2094 LVGIPLTPDDIEEGVDSLPTAQTCFFQLRLPPYSSQEAMANRLRYA 2139
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 265 DEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLA 360
D LP+ TC++ L +P YSS ++++KL LA
Sbjct: 1978 DHQLPTANTCISRLYMPLYSSRAILKSKLLLA 2009
>SB_19247| Best HMM Match : HECT (HMM E-Value=5.3)
Length = 158
Score = 32.3 bits (70), Expect = 0.44
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMRAKLRLAA 363
LP TC + L LP YSSA+V K+R A+
Sbjct: 114 LPEAATCSSTLFLPKYSSAKVAEEKIRYAS 143
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 98 RGIRMLIDILASYNREEQRHFLQFVTGSPRLP 193
R I+ L + L ++ E++ FL+FVTG RLP
Sbjct: 38 RRIKDLWNALENFTNEDRSRFLRFVTGRRRLP 69
>SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8)
Length = 498
Score = 32.3 bits (70), Expect = 0.44
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -2
Query: 225 SGGFNA-LNPPVGSLGLPVTNCKKCRCSSRLYEAKISISMRIPRDSALYP*SGRIHSASI 49
SGG + L PP S ++CK ++ ++ K ++ RI + P S HSAS+
Sbjct: 91 SGGSDVILYPPKSSATFTSSSCKPPESETQEFQEKNALEARISGEGT--PISMSNHSASL 148
Query: 48 RGSRRWSR--PPDGLPQN 1
S S PP G+P N
Sbjct: 149 SSSTASSSSFPPCGVPSN 166
>SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22)
Length = 965
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 3 FAEVHQVVVTNDGIHVCWRNECVRIMDTMQNRGVYACLLIFWLRTTVKNNDTSYSLLLE 179
F + V+ T DGI V W N + TM+ R V A W+ ++ ++ S S +L+
Sbjct: 246 FPTIDDVIPTQDGITVTWLNPSSEVQCTMRAR-VLAGRSRDWVTSSGSSSSASLSCVLD 303
>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 131 SYNREEQRHFLQFVTGSPRLPTGGFKAL 214
S++ E + LQFVTG+ R+P GF L
Sbjct: 483 SFDIETRARLLQFVTGTSRVPMNGFSEL 510
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 283 VMTCVNYLKLPDYSSAEVMRAKLRLA 360
V TC+ +KLP YS+ E+M +KL A
Sbjct: 3372 VETCMFMIKLPPYSTQEIMTSKLLYA 3397
>SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1264
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 490 VIVSSV*L-WTNVYVQSEPIFYNVMDTESAAFLVLFIFSILLDYIDM-FISYF 642
+ SS+ L + +VY+ S+P V+ + F V+F +LL +I + F +YF
Sbjct: 414 IAASSISLAFEDVYLDSKPTLKQVLQILNILFAVIFTVEMLLKWIGLGFKTYF 466
>SB_9642| Best HMM Match : PSI (HMM E-Value=3.6)
Length = 165
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 164 VRSVVVLHGCTKPKYQ*ACVYPAILHCI 81
V V+ G T P + C+ PA+LHC+
Sbjct: 81 VAQVIRQSGTTGPTFNQRCLQPALLHCL 108
>SB_22229| Best HMM Match : Arm (HMM E-Value=0)
Length = 1050
Score = 27.9 bits (59), Expect = 9.5
Identities = 7/16 (43%), Positives = 14/16 (87%)
Frame = -3
Query: 107 VYPAILHCIHDPDAFI 60
++PA+L+C+ DPD ++
Sbjct: 250 IFPAVLNCLKDPDEYV 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,910,593
Number of Sequences: 59808
Number of extensions: 522930
Number of successful extensions: 1167
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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