Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1461
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 57 1e-08
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ... 41 8e-04
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 40 0.003
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical pr... 39 0.003
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 38 0.010
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 37 0.018
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 37 0.018
AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP ubiquit... 36 0.031
AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical ... 35 0.072
AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical... 34 0.13
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 32 0.51
AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical ... 31 1.2
Z46793-4|CAA86773.1| 889|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z34800-5|CAA84325.1| 889|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical p... 30 2.1
Z47073-2|CAA87373.1| 507|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr... 28 8.3
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei... 28 8.3
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +2
Query: 71 PDHGYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKALNPPLTVVRK 241
P GY ES G +D++ + +E+++FLQF TG LP GG L+P LT+VRK
Sbjct: 2660 PKLGYTRESPGFLRFVDVMEALTAQERKNFLQFATGCSSLPPGGLANLHPRLTIVRK 2716
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +1
Query: 265 DEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSFHLS 393
D PSV TCV+YLKLP+YSS+ ++R +L A +E FHL+
Sbjct: 2721 DGSYPSVNTCVHYLKLPEYSSSAILRERLLTAINE--KGFHLN 2761
>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
protein Y39A1C.2 protein.
Length = 1066
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 80 GYNAESRGIRMLIDILAS-YNREEQRHFLQFVTGSPRLPTGGFKALNPPLTV 232
G++ R I+ L DIL + + EE++ FL+FVT R P GF L PP ++
Sbjct: 943 GFHGNHRLIKWLWDILENKFTSEERKLFLKFVTSCSRPPVLGFSYLEPPFSI 994
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSFHLS 393
LP+ TC N LKLP+Y+ ++ KLR A G F LS
Sbjct: 1028 LPTASTCFNLLKLPNYNKKSLLLEKLRYAIHAGT-GFELS 1066
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 244 AGVLLDPDE--YLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSF 384
A V+L P E +LP+ TC++ L +P YSS V+R KL LA F
Sbjct: 2895 ASVMLRPQEDVFLPTANTCISRLYVPVYSSKRVLRTKLLLAIKAKNFGF 2943
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 244 AGVLLDPDE--YLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSF 384
A V+L P E +LP+ TC++ L +P YSS V+R KL LA F
Sbjct: 2895 ASVMLRPQEDVFLPTANTCISRLYVPVYSSKRVLRTKLLLAIKAKNFGF 2943
>Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical protein
D2085.4 protein.
Length = 1001
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +1
Query: 247 GVLLDP--DEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEG 372
GVL+ P D+ LP+ TC+N L++P YS+ + KLR A + G
Sbjct: 952 GVLVIPSSDDELPTSATCMNMLRIPKYSNRTKLEEKLRYAINSG 995
Score = 36.3 bits (80), Expect = 0.024
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 110 MLIDILASYNREEQRHFLQFVTGSPRLPTGGFKALNPPLTVV 235
M D++ + ++++ L+FVTG R P GFK++ P + V+
Sbjct: 913 MFWDVIDKLSNDDKKALLKFVTGCSRAPVDGFKSIQPRMGVL 954
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 80 GYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
G+ S I+ L S+ +E++ FLQFVTG+ ++P GF +L
Sbjct: 4073 GFQKTSTHIQWFWRALRSFEKEDKAKFLQFVTGTSKVPLQGFASL 4117
Score = 34.3 bits (75), Expect = 0.095
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSF 384
LP+ TC N L LP Y S E +R L LA E F
Sbjct: 4138 LPAAHTCFNQLDLPQYESYEKLRQSLLLAIRECTEGF 4174
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +2
Query: 83 YNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL----NPPLTVVRKSLE 250
Y +S+ + + S ++E++ LQFVTG+ R+P GGF L P L + + +
Sbjct: 691 YAPQSKQVTWFWQWVRSLDQEKRARLLQFVTGTCRVPVGGFSELMGSTGPQLFCIERVGK 750
Query: 251 SYWI-RMNIC 277
W+ R + C
Sbjct: 751 ENWLPRSHTC 760
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 265 DEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLA 360
+ +LP TC N L LP Y S + + KL +A
Sbjct: 751 ENWLPRSHTCFNRLDLPPYRSYDQLVEKLSMA 782
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +2
Query: 83 YNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL----NPPLTVVRKSLE 250
Y +S+ + + S ++E++ LQFVTG+ R+P GGF L P L + + +
Sbjct: 693 YAPQSKQVTWFWQWVRSLDQEKRARLLQFVTGTCRVPVGGFSELMGSTGPQLFCIERVGK 752
Query: 251 SYWI-RMNIC 277
W+ R + C
Sbjct: 753 ENWLPRSHTC 762
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 265 DEYLPSVMTCVNYLKLPDYSSAEVMRAKLRLA 360
+ +LP TC N L LP Y S + + KL +A
Sbjct: 753 ENWLPRSHTCFNRLDLPPYRSYDQLVEKLSMA 784
>AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP
ubiquitin-protein ligase protein.
Length = 655
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 274 LPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSFHLS 393
LP+ TC N LKLP+Y+ ++ KLR A G F LS
Sbjct: 617 LPTASTCFNLLKLPNYNKKSLLLEKLRYAIHAGT-GFELS 655
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 116 IDILASYNREEQRHFLQFVTGSPRLPTGGFKALNPPLTV 232
I + S EE++ FL+FVT R P GF L PP ++
Sbjct: 545 IFLRTSSTSEERKLFLKFVTSCSRPPVLGFSYLEPPFSI 583
>AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical
protein Y92H12A.2 protein.
Length = 724
Score = 34.7 bits (76), Expect = 0.072
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 80 GYNAESRGIRMLIDILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
GY S+ + + S++ E + LQFV+G+ R+P GF+ L
Sbjct: 621 GYGPSSQVVHNFWKCILSFDNEMRARVLQFVSGTSRVPMNGFREL 665
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 268 EYLPSVMTCVNYLKLPDYSSAEVMRAKLRLAASEGQHSF 384
+ LP TC N L LP Y++ + +++KL L A E F
Sbjct: 683 DMLPRAHTCFNRLDLPPYTTFKELKSKL-LTAIENSEIF 720
>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
protein Y48G8AL.1 protein.
Length = 1019
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 143 EEQRHFLQFVTGSPRLPTGGFKALN 217
+E+R FLQF+TGS R+P G++ L+
Sbjct: 946 DERRKFLQFLTGSTRIPVSGWEELH 970
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -2
Query: 183 GLPVTNCKKCRCSSRLYEAKISISMRIPRDSALY 82
G+ T+C+K RC S+L++ I + M + +D+ +
Sbjct: 54 GIVRTDCRKSRCLSKLFDMNIYLKMEVNQDTGSF 87
>AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical
protein Y32F6A.4 protein.
Length = 519
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +1
Query: 151 TTLLTVCYWKSKAANWWIQGIESTTNCGA*IAGVLLDPDEYLPSVMTCVNYLKLPDYSSA 330
T LL +C+ KS WW I T A I ++ +Y C + KLP + +
Sbjct: 190 TCLLPLCFLKSPQDFWWAVVIAMMTTSAAVILIIVGSIIDY----GKCAPFAKLPPFRTT 245
Query: 331 EVMRAKLRLAASEGQHS 381
+ + L S G HS
Sbjct: 246 NLFLSMGTLLFSVGGHS 262
>Z46793-4|CAA86773.1| 889|Caenorhabditis elegans Hypothetical
protein F45H7.6 protein.
Length = 889
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 277 PSVMTCVNYLKLPDYSSAEVMRAKLRLAASEG 372
P TC N L+LP Y++ + +++KL+ A G
Sbjct: 852 PRAHTCFNRLQLPSYNTKQQLKSKLQQAIVNG 883
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 119 DILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
+++ + +E+ L FVTGS +P GF AL
Sbjct: 800 EVIETMTNQERFDLLLFVTGSSSVPFEGFSAL 831
>Z34800-5|CAA84325.1| 889|Caenorhabditis elegans Hypothetical
protein F45H7.6 protein.
Length = 889
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 277 PSVMTCVNYLKLPDYSSAEVMRAKLRLAASEG 372
P TC N L+LP Y++ + +++KL+ A G
Sbjct: 852 PRAHTCFNRLQLPSYNTKQQLKSKLQQAIVNG 883
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 119 DILASYNREEQRHFLQFVTGSPRLPTGGFKAL 214
+++ + +E+ L FVTGS +P GF AL
Sbjct: 800 EVIETMTNQERFDLLLFVTGSSSVPFEGFSAL 831
>Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical
protein F14F8.13 protein.
Length = 328
Score = 29.9 bits (64), Expect = 2.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 570 KCGVLSFVHIFDSFRLHRYVYIIFC 644
+C V + ++ +F LH++V +IFC
Sbjct: 286 RCNVHEVIDLYSTFDLHKFVKVIFC 310
>Z47073-2|CAA87373.1| 507|Caenorhabditis elegans Hypothetical
protein ZC506.3 protein.
Length = 507
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/47 (23%), Positives = 27/47 (57%)
Frame = +1
Query: 487 FVIVSSV*LWTNVYVQSEPIFYNVMDTESAAFLVLFIFSILLDYIDM 627
F++VS++ +++ P+F+ ++ S +L+L F++ Y D+
Sbjct: 133 FLVVSALAFPNGPFIRPHPVFWRIVFGVSVVYLMLLQFTLFQTYTDI 179
>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical
protein F22E10.3 protein.
Length = 1327
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 21 VVVTNDGIHVCWRNECVRIMDTMQNRGVYACL 116
+ +TN ++C+++ C R+M M++R VY+ L
Sbjct: 161 ISITNFIQYMCFQHCCTRVMAQMRHRFVYSVL 192
>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
related (146.8 kD)(pgp-14) protein.
Length = 1327
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 21 VVVTNDGIHVCWRNECVRIMDTMQNRGVYACL 116
+ +TN ++C+++ C R+M M++R VY+ L
Sbjct: 161 ISITNFIQYMCFQHCCTRVMAQMRHRFVYSVL 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,490,467
Number of Sequences: 27780
Number of extensions: 397263
Number of successful extensions: 912
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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