Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1461
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   7.2  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   9.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  PDHGYNAESRGIRMLIDILASYNR 142
           P  G +A S   R+  D+L++YNR
Sbjct: 11  PFPGASANSEAKRLYDDLLSNYNR 34


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 167  FVTGSPRLPTGGFKALNPP 223
            F+ G P LP   F   NPP
Sbjct: 1149 FMEGMPHLPFTPFNFWNPP 1167


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +1

Query: 520 NVYVQSEPIFYNV 558
           +V V++EPI+YN+
Sbjct: 203 DVLVETEPIYYNL 215


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 230 VVRKSLESYWIRMNI 274
           VVR+ LE  WI ++I
Sbjct: 59  VVRRKLEENWIHVDI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,604
Number of Sequences: 438
Number of extensions: 5140
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)