Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1460
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 57 2e-08
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 55 5e-08
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 47 1e-05
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 46 3e-05
08_02_1590 + 28074137-28074247,28074791-28074886,28074976-280750... 38 0.009
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 38 0.012
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 28 7.1
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875... 28 9.4
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = -3
Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 589
D +Y D + +G++LWQVKSGT+FD+FLITDDP AK E K ++ EK
Sbjct: 313 DPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEETWGKHKDAEK 366
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = -3
Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 589
D +Y D + +G++LWQVKSGT+FD+ LITDDP AK+ E K ++ EK
Sbjct: 320 DPYIYAFDSLNHIGIELWQVKSGTLFDNILITDDPEYAKKFAEETWAKHKDAEK 373
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -3
Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEKK 586
D +LY + VG+++WQVK+G++FD+ LI DDP A+ EV +E EK+
Sbjct: 311 DPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARSVVDEVRAANKEAEKE 365
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 46.4 bits (105), Expect = 3e-05
Identities = 18/43 (41%), Positives = 30/43 (69%)
Frame = -3
Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERGE 619
D +LY + +G+++WQVK+G++FD+ LI DDP A++ E
Sbjct: 311 DPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARKAAE 353
>08_02_1590 +
28074137-28074247,28074791-28074886,28074976-28075023,
28075278-28075430
Length = 135
Score = 37.9 bits (84), Expect = 0.009
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -3
Query: 693 QVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 589
+VKSGT+FD+ LITDDP AK+ E K ++ EK
Sbjct: 37 RVKSGTLFDNILITDDPEYAKKFAEETWAKHKDAEK 72
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 8/54 (14%)
Frame = -3
Query: 726 DEICAVGLDLWQVKSGTIFDDFLITDDPAAA--------KERGEVIKKRQEGEK 589
D I A+G+++W ++ G +FD+ LI DD A K + EV K++++ E+
Sbjct: 359 DPIAAIGIEIWTMQDGILFDNILIADDEKVATSILEKSWKPKYEVEKEKEKAEE 412
>08_01_0036 -
267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 395 RTLRTPRYLMSWHSLINHNSLQLIVFLH 478
R L T +L++W + + H+SL + FLH
Sbjct: 119 RLLPTASHLLAWRTALAHSSLAVCRFLH 146
>02_05_0602 +
30283893-30284170,30286259-30286305,30286534-30287510,
30287611-30287920,30288561-30290197
Length = 1082
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 654 TDDPAAAKERGEVIKKRQEGEKKMK 580
+DDP AA++ GEV+K ++ K +K
Sbjct: 496 SDDPIAAQKAGEVLKNLEKCSKNIK 520
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,194,913
Number of Sequences: 37544
Number of extensions: 292638
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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