Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1460
         (767 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M84739-1|AAA51916.1|  417|Homo sapiens calreticulin protein.           60   6e-09
M32294-1|AAA36582.1|  417|Homo sapiens protein ( Human Ro ribonu...    60   6e-09
CR457070-1|CAG33351.1|  417|Homo sapiens CALR protein.                 60   6e-09
BT007448-1|AAP36116.1|  417|Homo sapiens calreticulin protein.         60   6e-09
BC020493-1|AAH20493.1|  417|Homo sapiens calreticulin protein.         60   6e-09
BC007911-1|AAH07911.1|  417|Homo sapiens calreticulin protein.         60   6e-09
BC002500-1|AAH02500.1|  417|Homo sapiens calreticulin protein.         60   6e-09
AY047586-1|AAL13126.1|  417|Homo sapiens calreticulin protein.         60   6e-09
AK223060-1|BAD96780.1|  406|Homo sapiens calreticulin precursor ...    60   6e-09
AD000092-6|AAB51176.1|  417|Homo sapiens calreticulin protein.         60   6e-09
BC014595-1|AAH14595.1|  384|Homo sapiens calreticulin 3 protein.       52   3e-06
AK058084-1|BAB71655.1|  384|Homo sapiens protein ( Homo sapiens ...    52   3e-06
M94859-1|AAA21749.1|  592|Homo sapiens calnexin protein.               31   6.0  
L18887-1|AAA21013.1|  592|Homo sapiens calnexin protein.               31   6.0  
L10284-1|AAA36125.1|  592|Homo sapiens calnexin protein.               31   6.0  
BC042843-1|AAH42843.1|  592|Homo sapiens calnexin protein.             31   6.0  
BC003552-1|AAH03552.1|  592|Homo sapiens calnexin protein.             31   6.0  
AJ271880-1|CAB72137.1|  592|Homo sapiens calnexin protein.             31   6.0  

>M84739-1|AAA51916.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 60.5 bits (140), Expect = 6e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKMK 580
           D ++Y  D    +GLDLWQVKSGTIFD+FLIT+D A A+E G E     +  EK+MK
Sbjct: 302 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMK 358


>M32294-1|AAA36582.1|  417|Homo sapiens protein ( Human Ro
           ribonucleoprotein autoantigen (Ro/SS-A), complete cds.
           ).
          Length = 417

 Score = 60.5 bits (140), Expect = 6e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKMK 580
           D ++Y  D    +GLDLWQVKSGTIFD+FLIT+D A A+E G E     +  EK+MK
Sbjct: 302 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMK 358


>CR457070-1|CAG33351.1|  417|Homo sapiens CALR protein.
          Length = 417

 Score = 60.5 bits (140), Expect = 6e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKMK 580
           D ++Y  D    +GLDLWQVKSGTIFD+FLIT+D A A+E G E     +  EK+MK
Sbjct: 302 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMK 358


>BT007448-1|AAP36116.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 60.5 bits (140), Expect = 6e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKMK 580
           D ++Y  D    +GLDLWQVKSGTIFD+FLIT+D A A+E G E     +  EK+MK
Sbjct: 302 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMK 358


>BC020493-1|AAH20493.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 60.5 bits (140), Expect = 6e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKMK 580
           D ++Y  D    +GLDLWQVKSGTIFD+FLIT+D A A+E G E     +  EK+MK
Sbjct: 302 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMK 358


>BC007911-1|AAH07911.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 60.5 bits (140), Expect = 6e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKMK 580
           D ++Y  D    +GLDLWQVKSGTIFD+FLIT+D A A+E G E     +  EK+MK
Sbjct: 302 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMK 358


>BC002500-1|AAH02500.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 60.5 bits (140), Expect = 6e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKMK 580
           D ++Y  D    +GLDLWQVKSGTIFD+FLIT+D A A+E G E     +  EK+MK
Sbjct: 302 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMK 358


>AY047586-1|AAL13126.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 60.5 bits (140), Expect = 6e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKMK 580
           D ++Y  D    +GLDLWQVKSGTIFD+FLIT+D A A+E G E     +  EK+MK
Sbjct: 302 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMK 358


>AK223060-1|BAD96780.1|  406|Homo sapiens calreticulin precursor
           variant protein.
          Length = 406

 Score = 60.5 bits (140), Expect = 6e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKMK 580
           D ++Y  D    +GLDLWQVKSGTIFD+FLIT+D A A+E G E     +  EK+MK
Sbjct: 291 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMK 347


>AD000092-6|AAB51176.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 60.5 bits (140), Expect = 6e-09
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKMK 580
           D ++Y  D    +GLDLWQVKSGTIFD+FLIT+D A A+E G E     +  EK+MK
Sbjct: 302 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMK 358


>BC014595-1|AAH14595.1|  384|Homo sapiens calreticulin 3 protein.
          Length = 384

 Score = 51.6 bits (118), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 36/56 (64%)
 Frame = -3

Query: 753 LRDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERGEVIKKRQEGEKK 586
           L   +L + + I A+GL+LWQV+SGTIFD+FLITDD   A   G+      +G ++
Sbjct: 286 LTQYDLSEFENIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPER 341


>AK058084-1|BAB71655.1|  384|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25355 fis, clone TST01593. ).
          Length = 384

 Score = 51.6 bits (118), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 36/56 (64%)
 Frame = -3

Query: 753 LRDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERGEVIKKRQEGEKK 586
           L   +L + + I A+GL+LWQV+SGTIFD+FLITDD   A   G+      +G ++
Sbjct: 286 LTQYDLSEFENIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPER 341


>M94859-1|AAA21749.1|  592|Homo sapiens calnexin protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDD 646
           D   ++     A+GL+LW + S   FD+F+I  D
Sbjct: 410 DLEPFRMTPFSAIGLELWSMTSDIFFDNFIICAD 443


>L18887-1|AAA21013.1|  592|Homo sapiens calnexin protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDD 646
           D   ++     A+GL+LW + S   FD+F+I  D
Sbjct: 410 DLEPFRMTPFSAIGLELWSMTSDIFFDNFIICAD 443


>L10284-1|AAA36125.1|  592|Homo sapiens calnexin protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDD 646
           D   ++     A+GL+LW + S   FD+F+I  D
Sbjct: 410 DLEPFRMTPFSAIGLELWSMTSDIFFDNFIICAD 443


>BC042843-1|AAH42843.1|  592|Homo sapiens calnexin protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDD 646
           D   ++     A+GL+LW + S   FD+F+I  D
Sbjct: 410 DLEPFRMTPFSAIGLELWSMTSDIFFDNFIICAD 443


>BC003552-1|AAH03552.1|  592|Homo sapiens calnexin protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDD 646
           D   ++     A+GL+LW + S   FD+F+I  D
Sbjct: 410 DLEPFRMTPFSAIGLELWSMTSDIFFDNFIICAD 443


>AJ271880-1|CAB72137.1|  592|Homo sapiens calnexin protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDD 646
           D   ++     A+GL+LW + S   FD+F+I  D
Sbjct: 410 DLEPFRMTPFSAIGLELWSMTSDIFFDNFIICAD 443


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,248,059
Number of Sequences: 237096
Number of extensions: 1553995
Number of successful extensions: 3200
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3200
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)