Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1460
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...    51   1e-06
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...    51   1e-06
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK-ERGEVIKKRQEGEKKMK 580
           D  LY  +   A+G DLWQVKSGTIFD+ +ITD    A+    E   K +  EK+ K
Sbjct: 297 DDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEAHAAETFDKLKTVEKEKK 353


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK-ERGEVIKKRQEGEKKMK 580
           D  LY  +   A+G DLWQVKSGTIFD+ +ITD    A+    E   K +  EK+ K
Sbjct: 297 DDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEAHAAETFDKLKTVEKEKK 353


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -3

Query: 720 ICAVGLDLWQVKSGTIFDDFLIT---DDPAAAKERGEVIKKRQE 598
           I AVG+++W +    +FD+ LIT   +D +   ++   +K+++E
Sbjct: 411 ITAVGIEMWTMSENILFDNILITSSEEDSSDVAKQTFYVKQKEE 454


>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 681 GTIFDDFLITDDPAAAKERGEVIKKRQEGEKKMK 580
           G   D+    D+ A  KER E++KKR+E  K+ +
Sbjct: 654 GADSDESNSEDEEAEEKERQEILKKREEDLKRRR 687


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,436,122
Number of Sequences: 27780
Number of extensions: 282397
Number of successful extensions: 808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)