Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1460
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.1  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.2  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   7.2  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   7.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.2  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 190 NYLMFCYRSGTVCWDVNVKFYCTITFDVVA 101
           +Y     R+G  CWD N +     TF +VA
Sbjct: 311 DYFTQINRNGIACWDTNTELNPN-TFILVA 339


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 68  YNNNHNHTKH*GYYIECYCTVKLYIHVPAH 157
           YNNN+N+ K   Y I     + + + VP +
Sbjct: 96  YNNNNNYNKKLYYNINYIEQIPVPVPVPIY 125


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 68  YNNNHNHTKH*GYYIECYCTVKLYIHVPAH 157
           YNNN+N+ K   Y I     + + + VP +
Sbjct: 334 YNNNNNYNKKLYYNINYIEQIPVPVPVPIY 363


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 68  YNNNHNHTKH 97
           YN+NHN  +H
Sbjct: 425 YNHNHNQARH 434


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 764 PRVHSVIQTCTSATKS 717
           PRV SV++TC     S
Sbjct: 106 PRVESVVETCKKEVTS 121


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 764 PRVHSVIQTCTSATKS 717
           PRV SV++TC     S
Sbjct: 80  PRVESVVETCKKEVTS 95


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +2

Query: 197 INSERNPHLHGHQYETTDTFYLHTTCPYESVKFEPNTRTV 316
           I SER   L G + E     YL     Y   +  PN  TV
Sbjct: 484 IFSERPNLLEGWKVEKIQEIYLEALRAYVDNRRRPNPGTV 523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,250
Number of Sequences: 438
Number of extensions: 3513
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)