Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1460
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr...    50   2e-06
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q...    50   2e-06
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi...    49   4e-06
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi...    49   4e-06
At5g07340.1 68418.m00838 calnexin, putative identical to calnexi...    34   0.12 
At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin...    33   0.16 

>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
           calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
          Length = 425

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEK 589
           D  LY   ++  VG++LWQVKSG++FD+ L++DDP  AK+   E   K ++ EK
Sbjct: 306 DPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKHKDAEK 359


>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
           SP|Q38858 Calreticulin 2 precursor {Arabidopsis
           thaliana}
          Length = 424

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 589
           D  LY   ++  VGL+LWQVKSG++FD+ LI DDP  AK+   E   K ++ EK
Sbjct: 306 DPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWGKLKDAEK 359


>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
           to SP|O04153 Calreticulin 3 precursor {Arabidopsis
           thaliana}
          Length = 370

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEKKM 583
           D +LY    I   G+++WQVK+G+IFD+ LI DDPA A+    +   + +E EK++
Sbjct: 258 DPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFAQHRESEKEL 313


>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
           to SP|O04153 Calreticulin 3 precursor {Arabidopsis
           thaliana}
          Length = 424

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = -3

Query: 747 DSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEKKM 583
           D +LY    I   G+++WQVK+G+IFD+ LI DDPA A+    +   + +E EK++
Sbjct: 312 DPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFAQHRESEKEL 367


>At5g07340.1 68418.m00838 calnexin, putative identical to calnexin
           homolog 2 from Arabidopsis thaliana [SP|Q38798], strong
           similarity to calnexin homolog 1, Arabidopsis thaliana,
           EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262
           calreticulin family
          Length = 532

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -3

Query: 726 DEICAVGLDLWQVKSGTIFDDFLIT-DDPAAAKERGEVIKKRQEGEKK 586
           + I A+G+++W ++ G +FD+ LI+ D+  A   R    K + + EK+
Sbjct: 365 EPIAAIGIEIWTMQDGILFDNILISKDEKVAETYRQSTWKPKFDVEKE 412


>At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin
           homolog 1, Arabidopsis thaliana, EMBL:AT08315
           [SP|P29402]
          Length = 530

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
 Frame = -3

Query: 726 DEICAVGLDLWQVKSGTIFDDFLITDDPAAA--------KERGEVIKKRQEGEKK 586
           + I A+G+++W ++ G +FD+ LI  D   A        K + +V K++Q+ E++
Sbjct: 363 EPIAAIGIEIWTMQDGILFDNILIAKDEKVAETYRQTTWKPKFDVEKEKQKAEEE 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,727
Number of Sequences: 28952
Number of extensions: 243547
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)