Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1459
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739 90 2e-18
11_05_0016 - 18410889-18411104,18411326-18411381,18412883-184130... 41 9e-04
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 35 0.058
08_01_0966 + 9751198-9751530,9752182-9752337,9753145-9753240,975... 32 0.41
05_03_0038 + 7612866-7613132,7615691-7616608 30 1.7
03_01_0362 - 2825880-2826563 30 2.2
03_01_0541 + 4064491-4064715,4065018-4065070,4065190-4065226,406... 29 2.9
02_05_0387 - 28535947-28536130,28538615-28538788,28538824-285390... 29 2.9
12_01_0244 - 1821413-1822144 29 3.8
01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571 29 3.8
04_01_0408 - 5393354-5393659,5393974-5394219,5394442-5394583,539... 28 6.7
>01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739
Length = 179
Score = 89.8 bits (213), Expect = 2e-18
Identities = 42/75 (56%), Positives = 53/75 (70%)
Frame = +3
Query: 282 LYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDSYKXFGFEI 461
+YIMTLG L PYR LGIGS ++ HV++ ++ N I+LHVQ NN+ AI YK FGFEI
Sbjct: 91 VYIMTLGVLAPYRSLGIGSKLLNHVIDLCEKQ-NIPEIYLHVQTNNDDAIAFYKKFGFEI 149
Query: 462 VETKERYYKRIEPAD 506
+T E+YYK I P D
Sbjct: 150 TKTIEKYYKNITPPD 164
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/58 (53%), Positives = 41/58 (70%)
Frame = +1
Query: 82 KIELGDVTPHNIKQLKKLNTVVFPVSYNDKFYKDVLEAGELAKLAYYNDIVVGAVCCR 255
+ L V N+ QLKKLNT +FPV YN+K+Y D + + E +KLAYY+DI VGA+ CR
Sbjct: 23 RTSLDGVRDKNVMQLKKLNTALFPVRYNEKYYHDTIASKEFSKLAYYSDICVGAIACR 80
>11_05_0016 -
18410889-18411104,18411326-18411381,18412883-18413009,
18413113-18413307
Length = 197
Score = 41.1 bits (92), Expect = 9e-04
Identities = 25/83 (30%), Positives = 40/83 (48%)
Frame = +3
Query: 237 GSRVLQIDTSENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVN 416
G+ V ++ + R YI L L PYR GI + +V + + + G + + L +V
Sbjct: 76 GTVVCKMGEHRGAFRGYIAMLVVLKPYRGRGIATELVTRSIRVMMESG-CEEVTLEAEVT 134
Query: 417 NEGAIDSYKXFGFEIVETKERYY 485
N+GA+ Y GF + RYY
Sbjct: 135 NKGALALYGRLGFIRAKRLYRYY 157
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 35.1 bits (77), Expect = 0.058
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 285 YIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDSY-KXFGFEI 461
+I +L L +R+LG+ + ++ + Q + + LHV+ +N A + Y G++I
Sbjct: 72 HITSLAVLRSHRKLGLATKLMSAAQAAMDQVFGAEYVSLHVRRSNRAAFNLYTSTLGYQI 131
Query: 462 VETKERYYKRIEPADAMSYKRP 527
+ + +YY + DA ++P
Sbjct: 132 HDVEAKYY--ADGEDAYDMRKP 151
>08_01_0966 +
9751198-9751530,9752182-9752337,9753145-9753240,
9753599-9753719,9754027-9754196
Length = 291
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +3
Query: 279 RLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDSYKXFGFE 458
R Y+ + +R G+G +V ++ G D +++HV +NNE A Y GF
Sbjct: 203 RAYLSNVCVAKELQRNGLGYALVDKSKKLAREWGITD-LYVHVAINNEAAQKLYNKCGF- 260
Query: 459 IVETKERYYK 488
+ E++E +K
Sbjct: 261 VYESEEPAWK 270
>05_03_0038 + 7612866-7613132,7615691-7616608
Length = 394
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 226 HYNKLILRVHQPPEHLCKTYHYMTLEIQLCSI-FSTALYYAASRRRVL 86
H ++ +L PP H YH++ EI++ SI + L YA R++
Sbjct: 202 HLSRTMLLRFDPPPHRFHVYHFVWEEIRMASIQYKKGLVYAPHIMRMI 249
>03_01_0362 - 2825880-2826563
Length = 227
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 282 LYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDSYKXFGFEI 461
LY+ + P+RR G+G MM+ V + G + V N+ AID Y+ G E+
Sbjct: 138 LYVEDIFVRAPWRRRGLGRMMLSAVAGKAAELG-MGRVEWCVLDWNKNAIDFYEGMGAEV 196
Query: 462 V 464
+
Sbjct: 197 L 197
>03_01_0541 +
4064491-4064715,4065018-4065070,4065190-4065226,
4065409-4065474,4065809-4065907,4066000-4066153,
4066267-4066343,4066438-4066500
Length = 257
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 291 MTLGCLYPY-RRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDSYKXFGFEIVE 467
+T C+ Y RR GI S M+ ++ + +G + +++HV +N A Y GF +V+
Sbjct: 182 LTNVCVAKYARRQGIASNMLLLAIDAARLNGA-EEVYIHVHKDNLPARRLYDQIGFRMVD 240
>02_05_0387 -
28535947-28536130,28538615-28538788,28538824-28539023,
28539090-28539234,28539403-28539509
Length = 269
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Frame = +3
Query: 282 LYIMTLGCLYPYRRLGIGSMMVKH---------VLNYVK----QDGNFD--SIFLHVQVN 416
LYI+TLG + YR LGIG ++ ++N K Q ++ ++LHV
Sbjct: 101 LYILTLGVVESYRNLGIGCYLLVQLSFTVCDYDLINPHKHSRLQHPHWSERGVYLHVISY 160
Query: 417 NEGAIDSYKXFGFEIVETKERYY 485
N+ AI Y F++V +Y
Sbjct: 161 NQPAISFYNKMLFKLVRRLPHFY 183
>12_01_0244 - 1821413-1822144
Length = 243
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 578 SLCVILTR*PKVCSVVLWSFVRHGVCWFYSLIVTFFC 468
S V L R PK C V LW F + W + V FC
Sbjct: 62 SKVVYLCRDPKDCFVSLWHFWNRFMSWNIDVAVRQFC 98
>01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571
Length = 498
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 211 LAYYNDIVVGAVCCR*THRRTLGGFTL*HWDACIHIEDLVLVQ*WLSMC 357
L+ D+V A R T+ R H D C H+E+LV ++ W++ C
Sbjct: 154 LSSNEDVVKEAKYLRETNERLTRQIEQLHADHCAHVEELVYLK-WVNAC 201
>04_01_0408 -
5393354-5393659,5393974-5394219,5394442-5394583,
5394981-5395076,5395153-5395265,5395345-5395559,
5395645-5395742,5395815-5395935,5396020-5396240,
5396625-5396805,5396906-5397188,5397346-5397395,
5398565-5398805
Length = 770
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 228 HSGGSRVLQIDTSENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQD 377
HS GS + S S+ + + TL C+ + +GS ++ L+++ ++
Sbjct: 150 HSNGSWGVNEFDSSASKDILLSTLACIIALEKWNVGSEQIRRGLHFIAKN 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,918,336
Number of Sequences: 37544
Number of extensions: 367123
Number of successful extensions: 736
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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