Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1459
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)        41   0.001
SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08)        34   0.14 
SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10)        32   0.55 
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)                   30   1.7  
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)                     29   3.0  
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  

>SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)
          Length = 259

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = +3

Query: 237 GSRVLQIDTSENS-RRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQV 413
           G+ V ++D  ++   R YI  L     +RR  IG+ +VK  +  + +D N D + L  ++
Sbjct: 163 GAIVCKLDVHKSMVHRGYIAMLAVEKDFRRHKIGTALVKKAIRAMIED-NCDEVVLETEI 221

Query: 414 NNEGAIDSYKXFGFEIVETKERYYKRIEPADAMSYK 521
            N+ A+  Y+  GF   +   RYY  +   DA+  K
Sbjct: 222 TNKAALRLYENLGFVRDKRLFRYY--LNGVDALRLK 255


>SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08)
          Length = 573

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +3

Query: 285 YIMTLGCLYPYRRLGIGSMMVKHVLNYV--KQDGNFDSIFLHVQVNNEGAIDSYKXFGFE 458
           YI+++G +  YRR  IGS+++  +L+ +   +  +  +I+LHV  +N  A+  Y+   F+
Sbjct: 333 YILSIGVVEGYRRHKIGSLLLDSLLSNLTTPERHSCKAIYLHVLTSNMAAMRFYESRCFQ 392

Query: 459 IVETKERYY 485
                  YY
Sbjct: 393 RFRFLPLYY 401


>SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10)
          Length = 262

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 23/85 (27%), Positives = 38/85 (44%)
 Frame = +3

Query: 255 IDTSENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAID 434
           +D        YI  +     ++  GIGS M+ H++    Q      + LHV   N   + 
Sbjct: 170 VDEDVKYNEAYISFILVHPEWQHAGIGSYMLYHLI----QTCMGKDVTLHVSATNSAML- 224

Query: 435 SYKXFGFEIVETKERYYKRIEPADA 509
            Y+ FGF+  E    +Y+R  PA++
Sbjct: 225 LYQRFGFKPEEFIINFYERYLPANS 249


>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
          Length = 729

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +1

Query: 52  LNLVVKMTRAKIELGDVTPHNIKQLKKLNTVVFPVSYNDKFYKDVLEAGELAKLAYY 222
           L+++ K+  A   LG    H+IK LK++NTV+        F  ++L +G + KL  Y
Sbjct: 480 LDVMQKLIEATKSLGLDNLHDIKALKEINTVLSDSDGVSSF--EILHSGLVTKLLSY 534


>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
          Length = 510

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 466 KQKNVTIRE*NQQTPCLTKDHKTTEHTFGQRVSITHKDKRL*CRLTTKQHNVLFVN 633
           KQ+N  + +  +QT C   D +   H   ++ +    DK+  C L  KQHN   +N
Sbjct: 417 KQQNRQLMD--KQTNCHLMDKQQNRHLMDKQQNRQLMDKQTNCHLMDKQHNRHLMN 470


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 561 DPLTKGVLGSLMVFCKTWRLLVLFSYSNV 475
           DP + G+L ++M    TW  LV F+Y NV
Sbjct: 52  DPYSSGILFAVMTLVSTW--LVAFAYKNV 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,507,382
Number of Sequences: 59808
Number of extensions: 449154
Number of successful extensions: 998
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)