Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1459
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40420-2|AAK84526.3| 245|Caenorhabditis elegans Hypothetical pr... 94 8e-20
U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical pr... 52 6e-07
AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical... 50 2e-06
Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical... 37 0.017
AF067950-6|AAG24156.2| 372|Caenorhabditis elegans Serpentine re... 33 0.28
Z77661-1|CAB01186.1| 341|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical ... 28 6.0
AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine re... 28 7.9
>U40420-2|AAK84526.3| 245|Caenorhabditis elegans Hypothetical
protein F40F4.7 protein.
Length = 245
Score = 94.3 bits (224), Expect = 8e-20
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +1
Query: 85 IELGDVTPHNIKQLKKLNTVVFPVSYNDKFYKDVLEAGELAKLAYYNDIVVGAVCCR 255
+ LG++TPHNI QLKKLN VFP++YNDKFY + GEL +LAYYND+VVGAVCCR
Sbjct: 96 VHLGEITPHNILQLKKLNEDVFPIAYNDKFYVEARYCGELGRLAYYNDVVVGAVCCR 152
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/91 (38%), Positives = 54/91 (59%)
Frame = +3
Query: 237 GSRVLQIDTSENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVN 416
G+ +ID + + LY+MTLG L YR++GIG++++ + L + +++LHVQVN
Sbjct: 147 GAVCCRIDDISDEKSLYLMTLGTLAAYRQIGIGTILIDYALKLCNKMEEIKTMYLHVQVN 206
Query: 417 NEGAIDSYKXFGFEIVETKERYYKRIEPADA 509
N+ A+ Y+ GF E YY RI P DA
Sbjct: 207 NKNAVQFYEKHGFTNDGIIEDYY-RISPRDA 236
>U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical
protein F54E7.9 protein.
Length = 167
Score = 51.6 bits (118), Expect = 6e-07
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = +3
Query: 267 ENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSI---FLHVQVNNEGAIDS 437
E R LYI + G +R G+GS + +++V + G + LHVQ +N+ AI+
Sbjct: 80 ETGRVLYIRSFGVHPRHREAGLGSFL----MDFVDEKGKLLKLPHAMLHVQTSNKTAIEF 135
Query: 438 YKXFGFEIVETKERYYKRIEPADAMSYKRP 527
YK GF + +YY+R P DA ++P
Sbjct: 136 YKNRGFNVDCLVPQYYQRCSPPDAFIMRKP 165
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +1
Query: 82 KIELGDVTPHNIKQLKKLNTVVFPVSYNDKFYKDVLEAGELAKLAYYNDIVVGAVCCR 255
++ L VT NIK ++ L + +FPVSY+DKFY++ + EL + N + V +
Sbjct: 19 ELRLQRVTAENIKTVRILVSSIFPVSYSDKFYQECMN-NELTGVVIRNGEAIAIVAVK 75
>AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical
protein K07H8.3 protein.
Length = 182
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +3
Query: 285 YIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDSYK-XFGFEI 461
+I +L YRRLG+ + M+ + + N + LHV+V+N A++ YK FEI
Sbjct: 71 HITSLAVKRSYRRLGLANKMMDQTARAMVETYNAKYVSLHVRVSNRAALNLYKNTLKFEI 130
Query: 462 VETKERYYKRIEPADAM 512
V+T+ +YY E A AM
Sbjct: 131 VDTEPKYYADGEDAYAM 147
>Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical
protein F30F8.10b protein.
Length = 215
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +3
Query: 264 SENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFD-SIFLHVQVNNEGAIDSY 440
S N+ YI+++ +RRLG+ + ++ ++++ + + ++FLHV N A+ Y
Sbjct: 92 SSNAHVAYILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFY 151
Query: 441 KXFGFEIVETKERYYKRIEP-ADAMSY 518
K GFE + YY+ E AD +Y
Sbjct: 152 KMHGFEFHASLPEYYRIGEQLADGCTY 178
>Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical
protein F30F8.10a protein.
Length = 242
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +3
Query: 264 SENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFD-SIFLHVQVNNEGAIDSY 440
S N+ YI+++ +RRLG+ + ++ ++++ + + ++FLHV N A+ Y
Sbjct: 119 SSNAHVAYILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFY 178
Query: 441 KXFGFEIVETKERYYKRIEP-ADAMSY 518
K GFE + YY+ E AD +Y
Sbjct: 179 KMHGFEFHASLPEYYRIGEQLADGCTY 205
>AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical
protein B0238.10 protein.
Length = 278
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 285 YIMTLGCLYPYRRLGIGSMMVKHVLNYVKQDGNFDSIFLHVQVNNEGAIDSYKXFGFEIV 464
Y+ L RRLGIG+ +V+ L+ ++ G D I L +V+N+ A Y GF
Sbjct: 167 YLAMLAVDESCRRLGIGTRLVRRALDAMQSKG-CDEIVLETEVSNKNAQRLYSNLGFIRQ 225
Query: 465 ETKERYY 485
+ +YY
Sbjct: 226 KRLLKYY 232
>AF067950-6|AAG24156.2| 372|Caenorhabditis elegans Serpentine
receptor, class w protein122 protein.
Length = 372
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 249 LQIDTSENSRRLYIMTLGCLYPYRRLGIGSMMVKHVLNYVKQ 374
L + + S +++ T GC+YP R+ G+ ++ LN KQ
Sbjct: 330 LFMSSQYRSTTIHVFTCGCIYPKTRMSSGTRIISSPLNNFKQ 371
>Z77661-1|CAB01186.1| 341|Caenorhabditis elegans Hypothetical
protein F40G12.1 protein.
Length = 341
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 207 CEFTSLQNIFVKLIII*HWKYNCVQFFQLLY 115
C + + VK++II +W Y C FF L+Y
Sbjct: 247 CSILLMDHFQVKMMII-YWSYVCFNFFALVY 276
>AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical
protein Y39C12A.8 protein.
Length = 365
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 542 CSVVLWSFVRHGVCWFYSLIVTF 474
C LWSF + CW +S + TF
Sbjct: 343 CFGFLWSFSKGVPCWIWSFLTTF 365
>AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine
receptor, class h protein37 protein.
Length = 345
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = -3
Query: 659 HLLI*HSPE--FTNKTLCCFVVSLHHSRLSLCVILTR*PKVCSVVLWSFVRHGVCWFYSL 486
H + +PE FT KT+ V+ + CV LT+ PK ++ W H +C+
Sbjct: 6 HSIWNENPETYFTVKTIYAIFVTPIYPLAHYCV-LTKSPKSFGILKWIIYVHCICFTCEW 64
Query: 485 IVTFFCFN--NFKAEXLVRV 432
+ F + +F+ LV++
Sbjct: 65 LGNVFLIDVYDFQPSILVKI 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,345,121
Number of Sequences: 27780
Number of extensions: 355410
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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