Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1459
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.2  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   9.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 494 RTSRRHVLQKTIRLPSTP 547
           R SRRH+L+   ++P  P
Sbjct: 31  RISRRHLLELAEKIPGPP 48


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 124 LKKLNTVVFPVSYNDKFYKDVLEA 195
           +KK N V    ++N+K   D++ A
Sbjct: 67  MKKFNVVDENANFNEKISSDIVRA 90


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 118 KQLKKLNTVVFPVSYNDKFYKDVLEAGELAK 210
           +++++  T  F   Y  KF+ + L  GEL++
Sbjct: 406 REMRQRITEYFEHRYQGKFFDEELILGELSE 436


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 592 CRLTTKQHNVLFVNSGL 642
           C + T   NVLFVNS L
Sbjct: 5   CNIWTLAVNVLFVNSFL 21


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 592 CRLTTKQHNVLFVNSGL 642
           C + T   NVLFVNS L
Sbjct: 5   CNIWTLAVNVLFVNSFL 21


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 118 KQLKKLNTVVFPVSYNDKFYKDVLEAGELAK 210
           +++++  T  F   Y  KF+ + L  GEL++
Sbjct: 374 REMRQRITEYFEHRYQGKFFDEELILGELSE 404


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 592 CRLTTKQHNVLFVNSGL 642
           C + T   NVLFVNS L
Sbjct: 5   CNIWTLAVNVLFVNSFL 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,520
Number of Sequences: 438
Number of extensions: 4500
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)