Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1457
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.69 
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   6.4  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   8.5  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.5  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -3

Query: 597 MQ*NLFINLIKYNNIKIPCFILQNKQFHRM*YKYS*RHEIMVNHLDACEELLNAIKSIYK 418
           M  N F+N   + +IK   F  + K +    Y Y+       N LD  E+ LN++ + YK
Sbjct: 208 MNQNSFLNNFNFEHIKAD-FAFRQKNYEESIYLYARLLIKFPNRLDYSEKYLNSLWNFYK 266


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 439 CNKIYL*IGLNITIQKTLVLYSHYMNIQKLPKTESEHPTFHMVLSAL 299
           C +++L  G  I + + L+ YS+      + K ++E+P +H  LSAL
Sbjct: 17  CLRLFL-FGSLILLLRPLIFYSN----TTMKKLKTEYPIYHRHLSAL 58


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 582 FINLIKYNNIKIPCFILQN 526
           F+  +  N++KIPCFIL +
Sbjct: 307 FVGGVLENHLKIPCFILHS 325


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -3

Query: 546 PCFILQNKQFHRM*YKYS*RHEIMVNHLDACEELLNAI 433
           P  +LQN++FH++  +   +HE  +  ++A ++ L  +
Sbjct: 347 PASLLQNEEFHKLIEERQRQHEERLKRINANKKALEEL 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,374
Number of Sequences: 5004
Number of extensions: 67700
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)