Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1457
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588...    28   6.7  
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623     28   6.7  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           28   8.8  
02_02_0537 + 11308195-11309667                                         28   8.8  
01_05_0645 - 23899579-23904483                                         28   8.8  

>06_01_0786 -
           5881178-5881303,5881523-5881627,5882078-5882169,
           5882267-5882336,5882639-5882724,5882916-5883017,
           5883375-5883597,5883693-5883758,5883896-5883986,
           5884019-5884057,5885401-5885548,5885623-5885715,
           5885782-5885886,5886645-5886826,5886912-5887084
          Length = 566

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 241 HTGRGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYS 366
           H  +G S   PP+ + T G       G LD  +Q+W   G++
Sbjct: 356 HIFQGSSDEKPPLLVRTHGGPTDEARGVLDLGVQYWTSRGWA 397


>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
          Length = 400

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 24  LWLDSIIYRKRGPSFSPSSMVLNYLRRCGRRSPSA 128
           +++DS++ R+  PS  P++ +   +RR G   PSA
Sbjct: 11  MFIDSVMQRRGSPSPPPAAQLSGGVRRGGSSPPSA 45


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 604  ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 696
            ILH HPN         TQP   C  C Y+++
Sbjct: 1015 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 1045


>02_02_0537 + 11308195-11309667
          Length = 490

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 604 ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 696
           ILH HPN         TQP   C  C Y+++
Sbjct: 173 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 203


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 604  ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 696
            ILH HPN         TQP   C  C Y+++
Sbjct: 1292 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 1322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,886,902
Number of Sequences: 37544
Number of extensions: 415179
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)