Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1457
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)                 28   6.8  
SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1336

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 204 GWMLNATNQPKLQSWSMS*PCFSTQRRKGC 115
           GW+ N TN   L SW  +  C   +R K C
Sbjct: 806 GWLNNETNLENLISWLGTVHCVQEERDKDC 835


>SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)
          Length = 747

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 180 GWSHSASSLICSTSYGTHTLSHWARPLSLRAS 275
           GW HS +  + +T  G HTL++ A P+ L  +
Sbjct: 60  GWCHSVNVRLTATKSGRHTLTN-AAPIKLHVT 90


>SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 190 CDQPAETSELVDELTVLQHPKAEGLRLPQRRR*FRTILDGEKEGPLF 50
           CD+ A  + +VDEL  + HP       P  R   R ++ G+ +G LF
Sbjct: 7   CDKSAVGAVVVDELVEVVHP-VRPAASPPGRGIIRALVGGKLDGCLF 52


>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 359 PKITQN*IRASNFPHGLVCPTPNVYIKTGGAE 264
           PK T+  +RA   PH  V   P V   TGG E
Sbjct: 258 PKTTRKPVRAMETPHAEVLIQPKVTGATGGGE 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,111,209
Number of Sequences: 59808
Number of extensions: 468987
Number of successful extensions: 859
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)