Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1456
         (1001 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587...    30   2.5  
06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588...    29   7.7  

>06_01_0785 -
           5873244-5873357,5873458-5873562,5874333-5874424,
           5874525-5874594,5875080-5875202,5875287-5875372,
           5875547-5875648,5875874-5876096,5876217-5876282,
           5876407-5876497,5876574-5876701,5877734-5877749,
           5878171-5878318,5878440-5878511,5878586-5878690,
           5879122-5879291,5880093-5880424
          Length = 680

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 273 YLVWYPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYS 425
           Y  +YP S    +G     PP+ + T G       G LD  +Q+W   G++
Sbjct: 424 YAYFYPPSNPNFQGLPDEKPPLLVKTHGGPTAETRGILDLSVQYWTSRGWA 474


>06_01_0786 -
           5881178-5881303,5881523-5881627,5882078-5882169,
           5882267-5882336,5882639-5882724,5882916-5883017,
           5883375-5883597,5883693-5883758,5883896-5883986,
           5884019-5884057,5885401-5885548,5885623-5885715,
           5885782-5885886,5886645-5886826,5886912-5887084
          Length = 566

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 273 YLVWY-PHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYS 425
           Y  +Y PH+  + +G S   PP+ + T G       G LD  +Q+W   G++
Sbjct: 347 YAYFYAPHN-HIFQGSSDEKPPLLVRTHGGPTDEARGVLDLGVQYWTSRGWA 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,962,231
Number of Sequences: 37544
Number of extensions: 616433
Number of successful extensions: 1292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2940399740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)