Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1456
         (1001 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    30   3.0  
U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical pr...    29   6.9  

>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 101 NAILTKEH*PRISPLVPNSCSPGDPLV-LERRP 6
           N  LT E    + P++PN CS G+PL+ L++ P
Sbjct: 707 NNFLTLEDCGLVCPVLPNPCSLGEPLLSLQKEP 739


>U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical
           protein C27A2.4 protein.
          Length = 678

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 510 SQASKWFTIISCLHEYLYYHSVKLFILENKTRNFNIVIFNQIYKEI-LLHLTILHRH 677
           S  + +F  I+C HE  YY  + LF++ N    F I I   + +E+ L+ +  + RH
Sbjct: 343 SDRTPYFRKIACFHEMSYYVLIALFLVGN---IFTIEINETVPEELQLIFVHTVWRH 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,650,679
Number of Sequences: 27780
Number of extensions: 532665
Number of successful extensions: 1112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)