Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1456
         (1001 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   4.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   10.0 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   10.0 

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 498 CNKIYL*IGLNITIQKTLVFYS 433
           C++ YL I  NIT+++  +FY+
Sbjct: 227 CDEPYLDITFNITMRRKTLFYT 248


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 498 CNKIYL*IGLNITIQKTLVFYS 433
           C++ YL I  NIT+++  +FY+
Sbjct: 227 CDEPYLDITFNITMRRKTLFYT 248


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 498 CNKIYL*IGLNITIQKTLVFYS 433
           C++ YL I  NIT+++  +FY+
Sbjct: 223 CDEPYLDITFNITMRRKTLFYT 244


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 255  IQPHLLYLVWYPHSVTLGEGRS 320
            +Q H+ Y  W   S  +GEG+S
Sbjct: 1279 LQQHVEYQFWVTGSTRVGEGQS 1300


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 255  IQPHLLYLVWYPHSVTLGEGRS 320
            +Q H+ Y  W   S  +GEG+S
Sbjct: 1275 LQQHVEYQFWVTGSTRVGEGQS 1296


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 255 IQPHLLYLVWYPH 293
           +QP L++ +W PH
Sbjct: 169 VQPFLIHWIWTPH 181


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 468 NITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSALLLMY 346
           N+T+     + S+Y  I  L    +  PT+   L    LMY
Sbjct: 628 NVTLSTKCPYPSYYSYIGVLTLVATSMPTYICYLGKAYLMY 668


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 329 RGVRAALAQCDRVWVPYEVEQMRLDLNATNQPKLQSW 219
           R V A+    DRV V  E++ + +D+  T++  +Q W
Sbjct: 560 RYVYASQPDKDRVLVISEIQMVIVDVIPTDKNPVQLW 596


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 503 LNAIKSIYKLD*I*QYKKLSCF 438
           L+ +KS+Y+ +   Q KKL CF
Sbjct: 34  LSDLKSMYESNSEEQMKKLGCF 55


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 188 GGRAALPAAPEIIQNQTRWGERRSPLS 108
           GG    P    I+ ++  W ER  P+S
Sbjct: 58  GGVQVSPVQENIVIDKRPWWERYQPIS 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,632
Number of Sequences: 438
Number of extensions: 7349
Number of successful extensions: 26
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33258225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)