Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1455
         (785 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    24   1.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    24   1.2  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    24   1.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.8  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   6.4  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   6.4  

>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 561 FVDFKRCMLNQSKTITVYRLTLTVPRHLVRT*SE-R*SLTESKVFGDDDIEVNEVKKTDK 385
           F+DF RC L  +      +  L   +  VR  +  + +   SKVFG+D+  + ++ K++K
Sbjct: 60  FMDF-RCYLRPASGFQSLQFRLLENKLGVRQENRVKYNQNYSKVFGNDEKALEQIAKSEK 118


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 561 FVDFKRCMLNQSKTITVYRLTLTVPRHLVRT*SE-R*SLTESKVFGDDDIEVNEVKKTDK 385
           F+DF RC L  +      +  L   +  VR  +  + +   SKVFG+D+  + ++ K++K
Sbjct: 120 FMDF-RCYLRPASGFQSLQFRLLENKLGVRQENRVKYNQNYSKVFGNDEKALEQIAKSEK 178


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 561 FVDFKRCMLNQSKTITVYRLTLTVPRHLVRT*SE-R*SLTESKVFGDDDIEVNEVKKTDK 385
           F+DF RC L  +      +  L   +  VR  +  + +   SKVFG+D+  + ++ K++K
Sbjct: 120 FMDF-RCYLRPASGFQSLQFRLLENKLGVRQENRVKYNQNYSKVFGNDEKALEQIAKSEK 178


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 632  TNVSTYKSDAGVETIKLELQENLISWISNGV 540
            T  +TYK D  +  + + L   +I+W   GV
Sbjct: 1315 TFTTTYKEDVTLPCLAVGLPPPVITWKIKGV 1345


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 253 TPQPDTVRDTLAYIP 209
           TP+PD + + L ++P
Sbjct: 353 TPEPDCIHELLGHMP 367


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 438 KVFGDDDIEVNEVKKTDK 385
           KVFG+D+  + ++ K++K
Sbjct: 1   KVFGNDEKALEQIAKSEK 18


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,880
Number of Sequences: 336
Number of extensions: 3572
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)