Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1455
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    29   0.76 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    29   1.00 
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    28   1.3  
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    27   4.0  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   9.3  

>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 6   IEKKKQKIPLIR*YLLSLCACHRFLIS-GNDVKVVVASLYPTALSDASEVFRALSGFKVR 182
           IEKKK ++ +     L +   H  +   GN +   VA    +++ D ++VFR+L GFK  
Sbjct: 69  IEKKKSELIVRNSEGLPVMDIHEEVDKDGNIISASVAPQRISSVIDYADVFRSLPGFKNI 128

Query: 183 NRSLYRDRSGMYANVS 230
                RD S     +S
Sbjct: 129 ENGGNRDTSSRIEELS 144


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -2

Query: 283 TIKTPEKFTRTPQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATT 104
           +I   +    T  P  V  T++Y    S   D   T N   + ++   S S   YSD TT
Sbjct: 655 SITGSQSLKETSSPAYVSSTVSYT---SSSVDSSSTYNSTGSSSSDSQSFSGTTYSDPTT 711

Query: 103 TLTS 92
           T+TS
Sbjct: 712 TITS 715


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 205 RSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIR 77
           RSR   +FR ++P+K      A DS    S  T+  + L  +R
Sbjct: 443 RSRLKQIFRLIDPVKTMQFQQAEDSIRSKSTVTSATSLLNWVR 485


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 195 YRDRSGMYANVSRTVSGCGVRVNFSG 272
           YRDR+G+Y    ++ S  G R+  SG
Sbjct: 3   YRDRTGLYITFRQSYSHHGQRLELSG 28


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 553 IHEIRFSCNSSLIVSTPASDLYVLTLVSFV 642
           I E+ FS  +S IVS  A D+Y+  + SFV
Sbjct: 220 IDELDFSVLNS-IVSLDAKDIYIRVICSFV 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,641
Number of Sequences: 5004
Number of extensions: 58548
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)