Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1455
         (785 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1516|AAN10669.1| 1005|Drosophila melanogaster CG31897-P...    31   2.4  
BT022772-1|AAY55188.1|  661|Drosophila melanogaster IP13936p pro...    29   7.2  
AE014297-4207|AAF56767.1|  717|Drosophila melanogaster CG5527-PA...    29   7.2  
AY060437-1|AAL25476.1|  276|Drosophila melanogaster LD46538p pro...    29   9.5  
AE014296-1724|AAS65049.1|  276|Drosophila melanogaster CG18177-P...    29   9.5  

>AE014134-1516|AAN10669.1| 1005|Drosophila melanogaster CG31897-PA
           protein.
          Length = 1005

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 229 DTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNL 71
           ++LA     S+Y D+   LNP+   + S  S  +VG     + L   P +R+L
Sbjct: 529 ESLAKQMSMSKYFDIKTNLNPVSPSHLSQTSSVSVGKLKVNSALLPKPSVRSL 581


>BT022772-1|AAY55188.1|  661|Drosophila melanogaster IP13936p
           protein.
          Length = 661

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 105 VVASLYPTALSDAS--EVFRALSGFKVRNRSLYRDRSGMYANVSRTVSGCGVR 257
           + A L+P   +D +   V R+L GF   +R  +   S  + N+S  +S  GVR
Sbjct: 81  LAAELFPRPAADPAYLSVIRSLGGFPAVDRDAWNASSFSWFNMSAHLSNYGVR 133


>AE014297-4207|AAF56767.1|  717|Drosophila melanogaster CG5527-PA
           protein.
          Length = 717

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 105 VVASLYPTALSDAS--EVFRALSGFKVRNRSLYRDRSGMYANVSRTVSGCGVR 257
           + A L+P   +D +   V R+L GF   +R  +   S  + N+S  +S  GVR
Sbjct: 137 LAAELFPRPAADPAYLSVIRSLGGFPAVDRDAWNASSFSWFNMSAHLSNYGVR 189


>AY060437-1|AAL25476.1|  276|Drosophila melanogaster LD46538p
           protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 132 LSDASEVFRALSGFKVRNRSLYRDRSGMYANVSRTVS 242
           +SD+ E++  LSGF ++++ +  D  G  A+V   +S
Sbjct: 106 MSDSDELYTRLSGFPMQDKGILPDSMGRSADVGYILS 142


>AE014296-1724|AAS65049.1|  276|Drosophila melanogaster CG18177-PA,
           isoform A protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 132 LSDASEVFRALSGFKVRNRSLYRDRSGMYANVSRTVS 242
           +SD+ E++  LSGF ++++ +  D  G  A+V   +S
Sbjct: 106 MSDSDELYTRLSGFPMQDKGILPDSMGRSADVGYILS 142


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,650,260
Number of Sequences: 53049
Number of extensions: 580833
Number of successful extensions: 1123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)