Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1454
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.9  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   6.7  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   8.8  

>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 576 FKLGCVNVVF*WRFRVGNNFFLNLLASYKNLSFLYLISSWLTLF*VV 716
           F+ G   ++F + F V  N+F+ L   Y N+    L+ SW T+  V+
Sbjct: 205 FRHGWKYIIFAF-FDVEGNYFVVLAYQYTNMLSASLLDSWATVAVVI 250


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 742 KMFSASVHDTTQNRVSQLLIRYRKDRFLYDANKFKKK 632
           K  + S H   + +VSQ   R ++ +FLYD   FKK+
Sbjct: 637 KQDNVSFHVNKKRKVSQK--REKQKKFLYDEPTFKKE 671


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 730 ASVHDTTQNRVSQLLIRYRKDRFLYDANKFK 638
           ASV  +TQN  S   I  R+  + +  N FK
Sbjct: 386 ASVRQSTQNDFSNSNIHDRRSSYTFQLNNFK 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,092
Number of Sequences: 5004
Number of extensions: 52846
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)